Basic Information
Gene Model:Bol036894
Gene Family:Transcription Factor Families
Chromosome:C05
Scaffold:Scaffold000027
Sequence:
 | 
Gene Structure
Nucleotide Length:1528 bp
Transcript Length:927 bp
Protein Length:308 aa
Strand:-
Location:C05: 26885590 : 26887117
Gene CDSs(4): 1-261 | 350-633 | 722-1013 | 1439-1528 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02362B3 15 113 1.8e-20IPR003340Transcriptional factor B3
HMMPfamPF02362B3 209 303 1.3e-14IPR003340Transcriptional factor B3
Segsegseg 162 169 NANot foundNot found
Segsegseg 185 205 NANot foundNot found
Gene3DG3DSA:2.40.330.10no description 200 300 0.00089Not foundNot found
Gene3DG3DSA:2.40.330.10no description 6 113 6.4e-19Not foundNot found
ProfileScanPS50863B3 207 301 10.800IPR003340Transcriptional factor B3
ProfileScanPS50863B3 16 111 13.606IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9LSP65e-90Y3701_ARATH B3 domain-containing protein At3g17010 OS=Arabidopsis thaliana GN=At3g17010 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q3E8F61e-22Q3E8F6_ARATH Putative uncharacterized protein At5g46915.1 OS=Arabidopsis thaliana GN=At5g46915 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL26994(2 genes,2 taxa):Brassica oleraceaBol036894
ORTHOMCL26994(2 genes,2 taxa):Brassica rapaBra022189
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:26556328..28445586 (-)A.thalianaChr3:4961806..5894446 (+)139
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:26541780..27385560 (+)B.rapaA05:4405357..4782135 (-)43
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1701058004605802468Chr3Subgenome_III(LF)334
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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