Basic Information
Gene Model:Bol036872
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000027
Sequence:
 | 
Gene Structure
Nucleotide Length:1469 bp
Transcript Length:1260 bp
Protein Length:419 aa
Strand:+
Location:C05: 26556328 : 26557796
Gene CDSs(2): 1-285 | 495-1469 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00481PP2C 113 382 1.2e-70IPR014045Protein phosphatase 2C, N-terminal
PatternScanPS01032PP2C 154 162 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
Gene3DG3DSA:3.60.40.10no description 111 393 8.8e-70IPR001932Protein phosphatase 2C-related
superfamilySSF81606Protein serine/threo 111 389 1.3e-71IPR001932Protein phosphatase 2C-related
Segsegseg 305 312 NANot foundNot found
Segsegseg 275 289 NANot foundNot found
Segsegseg 46 65 NANot foundNot found
HMMSmartSM00331no description 129 389 0.0061IPR001932Protein phosphatase 2C-related
HMMSmartSM00332no description 104 387 1e-73IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832PROTEIN PHOSPHATASE 111 408 7e-162IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF92PROTEIN PHOSPHATASE 111 408 7e-162Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q9LUU70.0P2C43_ARATH Probable protein phosphatase 2C 43 OS=Arabidopsis thaliana GN=At3g17250 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9I9E01e-105B9I9E0_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1098924 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
osa:43377237e-91K01090E3.1.3.16protein phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL22731(2 genes,2 taxa):Arabidopsis thalianaAT3G17250.1
ORTHOMCL22731(2 genes,2 taxa):Brassica oleraceaBol036872
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:26541780..27385560 (+)B.rapaA05:4405357..4782135 (-)43
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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