Basic Information
Gene Model:Bol036846
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000027
Sequence:
 | 
Gene Structure
Nucleotide Length:2473 bp
Transcript Length:1773 bp
Protein Length:590 aa
Strand:+
Location:C05: 26282167 : 26284639
Gene CDSs(8): 1-198 | 455-616 | 691-796 | 882-1080 | 1156-1237 | 1306-1388 | 1470-1602 | 1664-2473 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50206RHODANESE_3 166 266 13.450IPR001763Rhodanese-like
superfamilySSF52821Rhodanese/Cell cycle 114 297 3.9e-13IPR001763Rhodanese-like
superfamilySSF53474alpha/beta-Hydrolase 361 587 3.8e-09Not foundNot found
PatternScanPS00652TNFR_NGFR_1 291 329 NAIPR001368TNFR/CD27/30/40/95 cysteine-rich region
Segsegseg 304 317 NANot foundNot found
Gene3DG3DSA:3.40.250.10no description 166 260 2.6e-09IPR001763Rhodanese-like
HMMPantherPTHR18838RHODANESE-LIKE DOMAI 14 377 3.6e-112Not foundNot found
HMMSmartSM00450no description 156 263 1e-08IPR001763Rhodanese-like
HMMPfamPF03959FSH1 358 590 2.4e-08IPR005645Protein of unknown function DUF341
Gene Ontology
GO TermGO TypeDescription
GO:0004872 Molecular Function receptor activity
Swiss-Prot
Best HitE_value Description
Q5T7W73e-49CI097_HUMAN Uncharacterized protein C9orf97 OS=Homo sapiens GN=C9orf97 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q94AC10.0Q94AC1_ARATH At1g09280/T12M4_1 OS=Arabidopsis thaliana GN=At1g09280 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ota:Ot14g028802e-27K10838XPCxeroderma pigmentosum group C-complementing protein
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL7137(9 genes,8 taxa):Arabidopsis thalianaAT1G09280.1
ORTHOMCL7137(9 genes,8 taxa):Brassica oleraceaBol036846
ORTHOMCL7137(9 genes,8 taxa):Brassica rapaBra018569
ORTHOMCL7137(9 genes,8 taxa):Vitis viniferaGSVIVT01031261001
ORTHOMCL7137(9 genes,8 taxa):Oryza sativaOs12t0563400-01
ORTHOMCL7137(9 genes,8 taxa):Populus trichocarpaPOPTR_0005s01480.1
ORTHOMCL7137(9 genes,8 taxa):Populus trichocarpaPOPTR_0005s01480.2
ORTHOMCL7137(9 genes,8 taxa):Sorghum bicolorSb08g018330.1
ORTHOMCL7137(9 genes,8 taxa):Carica papayaevm.TU.supercontig_48.175
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:26021124..26306657 (-)A.thalianaChr1:21089844..21438889 (+)17
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:25986305..26557796 (+)B.rapaA08:1164245..1333262 (-)30
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G0928029981003001315Chr1Subgenome_III(LF)171
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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