Basic Information
Gene Model:Bol036836
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000027
Sequence:
 | 
Gene Structure
Nucleotide Length:3191 bp
Transcript Length:1161 bp
Protein Length:386 aa
Strand:+
Location:C05: 26247632 : 26250822
Gene CDSs(7): 1-182 | 1480-1542 | 1742-1858 | 1944-2196 | 2477-2635 | 2723-2874 | 2957-3191 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00892DUF6 18 151 1.7e-16IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 196 325 4.2e-16IPR000620Protein of unknown function DUF6, transmembrane
Coilcoilcoiled-coil 327 348 NANot foundNot found
superfamilySSF103481Multidrug resistance 221 332 2.2e-11Not foundNot found
superfamilySSF103481Multidrug resistance 43 158 1.4e-09Not foundNot found
Segsegseg 366 381 NANot foundNot found
Segsegseg 282 297 NANot foundNot found
Segsegseg 332 354 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1634e-535NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q8GXB41e-180Q8GXB4_ARATH Putative nodulin protein N21 OS=Arabidopsis thaliana GN=At1g09380/F14J9_4 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5564(10 genes,8 taxa):Arabidopsis thalianaAT1G09380.1
ORTHOMCL5564(10 genes,8 taxa):Brassica oleraceaBol006589
ORTHOMCL5564(10 genes,8 taxa):Brassica oleraceaBol036836
ORTHOMCL5564(10 genes,8 taxa):Brassica rapaBra020026
ORTHOMCL5564(10 genes,8 taxa):Brassica rapaBra031664
ORTHOMCL5564(10 genes,8 taxa):Vitis viniferaGSVIVT01031289001
ORTHOMCL5564(10 genes,8 taxa):Oryza sativaOs01t0297700-01
ORTHOMCL5564(10 genes,8 taxa):Populus trichocarpaPOPTR_0005s00820.1
ORTHOMCL5564(10 genes,8 taxa):Sorghum bicolorSb03g012300.1
ORTHOMCL5564(10 genes,8 taxa):Carica papayaevm.TU.supercontig_48.195
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:26021124..26306657 (-)A.thalianaChr1:21089844..21438889 (+)17
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:25518352..26276845 (+)B.rapaA09:1777452..2077156 (-)40
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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