Basic Information
Gene Model:Bol036774
Gene Family:Amino Acid/Auxin Permease AAAP Family
Chromosome:C05
Scaffold:Scaffold000027
Sequence:
 | 
Gene Structure
Nucleotide Length:2525 bp
Transcript Length:1449 bp
Protein Length:482 aa
Strand:-
Location:C05: 25919632 : 25922156
Gene CDSs(6): 1-420 | 566-790 | 1049-1239 | 1581-1795 | 1893-1986 | 2222-2525 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 201 225 NANot foundNot found
HMMPfamPF01490Aa_trans 25 472 6.6e-132IPR013057Amino acid transporter, transmembrane
HMMPantherPTHR22950AMINO ACID TRANSPORT 14 481 3.3e-93Not foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
O805920.0AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q7Y0770.0Q7Y077_BRANA Amino acid permease 1 OS=Brassica napus GN=aap1 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_04230207e-08K14209SLC36A1, PAT1solute carrier family 36 (proton-coupled amino acid transporter), member 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL577(25 genes,7 taxa):Arabidopsis thalianaAT1G10010.1
ORTHOMCL577(25 genes,7 taxa):Arabidopsis thalianaAT1G58360.1
ORTHOMCL577(25 genes,7 taxa):Arabidopsis thalianaAT5G49630.1
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol006986
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol031230
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol031231
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol031232
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol036772
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol036773
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol036774
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol044090
ORTHOMCL577(25 genes,7 taxa):Brassica oleraceaBol045048
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra017905
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra019969
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra027868
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra031695
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra031697
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra035446
ORTHOMCL577(25 genes,7 taxa):Brassica rapaBra039735
ORTHOMCL577(25 genes,7 taxa):Vitis viniferaGSVIVT01009260001
ORTHOMCL577(25 genes,7 taxa):Oryza sativaOs07t0134000-01
ORTHOMCL577(25 genes,7 taxa):Oryza sativaOs07t0134000-02
ORTHOMCL577(25 genes,7 taxa):Oryza sativaOs07t0134000-03
ORTHOMCL577(25 genes,7 taxa):Populus trichocarpaPOPTR_0009s08840.1
ORTHOMCL577(25 genes,7 taxa):Sorghum bicolorSb02g002440.1
Tandem Duplication
ClusterGene Num.Gene List
Cluster_1833Bol036772 Bol036773 Bol036774 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:24991074..26433437 (-)A.thalianaChr1:2936528..3985215 (+)165
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:25518352..26276845 (+)B.rapaA09:1777452..2077156 (-)40
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1001032659763268726Chr1Subgenome_III(LF)171
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo