Basic Information
Gene Model:Bol036767
Gene Family:Transcription Factor Families
Chromosome:C05
Scaffold:Scaffold000027
Sequence:
 | 
Gene Structure
Nucleotide Length:1535 bp
Transcript Length:1029 bp
Protein Length:342 aa
Strand:+
Location:C05: 25873035 : 25874569
Gene CDSs(6): 1-441 | 571-747 | 817-882 | 984-1052 | 1163-1234 | 1332-1535 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF47459HLH, helix-loop-heli 194 279 1.6e-15IPR011598Helix-loop-helix DNA-binding
ProfileScanPS50888HLH 190 247 11.847IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMPantherPTHR12565STEROL REGULATORY EL 172 246 0.00033Not foundNot found
HMMPantherPTHR12565:SF7CENTROMERE-BINDING P 172 246 0.00033Not foundNot found
HMMSmartSM00353no description 202 252 4.6e-10IPR001092Basic helix-loop-helix dimerisation region bHLH
Segsegseg 158 171 NANot foundNot found
Segsegseg 90 107 NANot foundNot found
HMMPfamPF00010HLH 197 247 8.9e-08IPR001092Basic helix-loop-helix dimerisation region bHLH
Gene3DG3DSA:4.10.280.10no description 192 264 1.5e-06IPR011598Helix-loop-helix DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q6NKN91e-146BH074_ARATH Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1
TrEMBL
Best HitE_value Description
A3FM284e-63A3FM28_SESIN Basic helix-loop-helix protein OS=Sesamum indicum GN=bHLH PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G095305e-13K12126PIF3phytochrome-interacting factor 3
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL26986(2 genes,2 taxa):Brassica oleraceaBol036767
ORTHOMCL26986(2 genes,2 taxa):Brassica rapaBra019962
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:24991074..26433437 (-)A.thalianaChr1:2936528..3985215 (+)165
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:25518352..26276845 (+)B.rapaA09:1777452..2077156 (-)40
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1012033040393306824Chr1Subgenome_III(LF)171
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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