| Basic Information |
| Gene Model: | Bol036734 |
| Gene Family: | Transcription Factor Families |
| Chromosome: | C05 |
| Scaffold: | Scaffold000027 |
| Sequence: | |
| Gene Structure |
|
| Nucleotide Length: | 1549 bp |
| Transcript Length: | 801 bp |
| Protein Length: | 266 aa |
| Strand: | - |
| Location: | C05: 25703684 : 25705232 |
| Gene CDSs(6): | 1-126 | 372-443 | 536-604 | 684-749 | 869-1033 | 1247-1549 | |
| Protein Sequence Features |
| Interpro |
 |
| Database | Terms | Identifier | Start | End | E-value | InterPro ID | Description | | ProfileScan | PS50888 | HLH |
140 |
197 |
12.402 | IPR001092 | Basic helix-loop-helix dimerisation region bHLH | | HMMPfam | PF00010 | HLH |
147 |
197 |
1.2e-08 | IPR001092 | Basic helix-loop-helix dimerisation region bHLH | | superfamily | SSF47459 | HLH, helix-loop-heli |
144 |
229 |
1.6e-16 | IPR011598 | Helix-loop-helix DNA-binding | | HMMPanther | PTHR12565 | STEROL REGULATORY EL |
149 |
196 |
2.1e-07 | Not found | Not found | | HMMPanther | PTHR12565:SF7 | CENTROMERE-BINDING P |
149 |
196 |
2.1e-07 | Not found | Not found | | Gene3D | G3DSA:4.10.280.10 | no description |
142 |
223 |
5e-09 | IPR011598 | Helix-loop-helix DNA-binding | | Coil | coil | coiled-coil |
193 |
214 |
NA | Not found | Not found | | HMMSmart | SM00353 | no description |
152 |
202 |
1e-10 | IPR001092 | Basic helix-loop-helix dimerisation region bHLH | |
| Gene Ontology |
| GO Term | GO Type | Description |
| GO:0005634 |
Cellular Component |
nucleus | | GO:0030528 |
Molecular Function |
transcription regulator activity | | GO:0045449 |
Biological Process |
regulation of transcription |
|
| Swiss-Prot |
| Best Hit | E_value |
Description | | Q0JXE7 | 1e-77 | BPE_ARATH Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1 |
|
| TrEMBL |
| Best Hit | E_value |
Description | | B9S2F8 | 1e-78 | B9S2F8_RICCO DNA binding protein, putative OS=Ricinus communis GN=RCOM_0699220 PE=4 SV=1 |
|
| KEGG |
| Best Hit | E_value | KO | EC or Symbol |
Description | | ath:AT1G09530 | 1e-13 | K12126 | PIF3 | phytochrome-interacting factor 3 |
|
| Gene Cluster |
| Orthologs |
| OrthoMCL Group | Species | Gene List | | ORTHOMCL5791(10 genes,8 taxa): | Arabidopsis thaliana | AT1G59640.2 | | ORTHOMCL5791(10 genes,8 taxa): | Brassica oleracea | Bol036734 | | ORTHOMCL5791(10 genes,8 taxa): | Brassica rapa | Bra019935 | | ORTHOMCL5791(10 genes,8 taxa): | Vitis vinifera | GSVIVT01020121001 | | ORTHOMCL5791(10 genes,8 taxa): | Oryza sativa | Os03t0802900-01 | | ORTHOMCL5791(10 genes,8 taxa): | Populus trichocarpa | POPTR_0008s19510.1 | | ORTHOMCL5791(10 genes,8 taxa): | Populus trichocarpa | POPTR_0010s04920.1 | | ORTHOMCL5791(10 genes,8 taxa): | Populus trichocarpa | POPTR_0010s04920.2 | | ORTHOMCL5791(10 genes,8 taxa): | Sorghum bicolor | Sb01g004710.1 | | ORTHOMCL5791(10 genes,8 taxa): | Carica papaya | evm.TU.supercontig_5.294 |
|
| Tandem Duplication |
| Cluster | Gene Num. | Gene List | The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase. |
|
| Synteny Analysis |
| Synteny Genes |
| Compared to A.thaliana |
Compared to B.rapa |
| Synteny Regions |
|
|
| Trplicated Block |
| Block | Best Hit | Start | END | Chromosome | Subgenome | Num. of Gene Pairs on Block | Note: this gene was no corresponding triplicated genes. | |
|
