Basic Information
Gene Model:Bol036734
Gene Family:Transcription Factor Families
Chromosome:C05
Scaffold:Scaffold000027
Sequence:
 | 
Gene Structure
Nucleotide Length:1549 bp
Transcript Length:801 bp
Protein Length:266 aa
Strand:-
Location:C05: 25703684 : 25705232
Gene CDSs(6): 1-126 | 372-443 | 536-604 | 684-749 | 869-1033 | 1247-1549 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50888HLH 140 197 12.402IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMPfamPF00010HLH 147 197 1.2e-08IPR001092Basic helix-loop-helix dimerisation region bHLH
superfamilySSF47459HLH, helix-loop-heli 144 229 1.6e-16IPR011598Helix-loop-helix DNA-binding
HMMPantherPTHR12565STEROL REGULATORY EL 149 196 2.1e-07Not foundNot found
HMMPantherPTHR12565:SF7CENTROMERE-BINDING P 149 196 2.1e-07Not foundNot found
Gene3DG3DSA:4.10.280.10no description 142 223 5e-09IPR011598Helix-loop-helix DNA-binding
Coilcoilcoiled-coil 193 214 NANot foundNot found
HMMSmartSM00353no description 152 202 1e-10IPR001092Basic helix-loop-helix dimerisation region bHLH
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q0JXE71e-77BPE_ARATH Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1
TrEMBL
Best HitE_value Description
B9S2F81e-78B9S2F8_RICCO DNA binding protein, putative OS=Ricinus communis GN=RCOM_0699220 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G095301e-13K12126PIF3phytochrome-interacting factor 3
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5791(10 genes,8 taxa):Arabidopsis thalianaAT1G59640.2
ORTHOMCL5791(10 genes,8 taxa):Brassica oleraceaBol036734
ORTHOMCL5791(10 genes,8 taxa):Brassica rapaBra019935
ORTHOMCL5791(10 genes,8 taxa):Vitis viniferaGSVIVT01020121001
ORTHOMCL5791(10 genes,8 taxa):Oryza sativaOs03t0802900-01
ORTHOMCL5791(10 genes,8 taxa):Populus trichocarpaPOPTR_0008s19510.1
ORTHOMCL5791(10 genes,8 taxa):Populus trichocarpaPOPTR_0010s04920.1
ORTHOMCL5791(10 genes,8 taxa):Populus trichocarpaPOPTR_0010s04920.2
ORTHOMCL5791(10 genes,8 taxa):Sorghum bicolorSb01g004710.1
ORTHOMCL5791(10 genes,8 taxa):Carica papayaevm.TU.supercontig_5.294
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:24991074..26433437 (-)A.thalianaChr1:2936528..3985215 (+)165
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:25518352..26276845 (+)B.rapaA09:1777452..2077156 (-)40
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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