Basic Information
Gene Model:Bol036731
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000027
Sequence:
 | 
Gene Structure
Nucleotide Length:1110 bp
Transcript Length:684 bp
Protein Length:227 aa
Strand:+
Location:C05: 25692485 : 25693594
Gene CDSs(4): 1-175 | 247-323 | 598-668 | 750-1110 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 207 215 NANot foundNot found
Segsegseg 148 185 NANot foundNot found
ProfileScanPS50110RESPONSE_REGULATORY 34 135 9.762IPR001789Signal transduction response regulator, receiver region
HMMPfamPF00072Response_reg 35 131 7.1e-06IPR001789Signal transduction response regulator, receiver region
superfamilySSF52172CheY-like 30 136 3.7e-15IPR011006CheY-like
HMMPantherPTHR23283SENSOR HISTIDINE KIN 34 140 1e-05Not foundNot found
HMMPantherPTHR23283:SF49TWO-COMPONENT SENSOR 34 140 1e-05Not foundNot found
Gene3DG3DSA:3.40.50.2300no description 26 143 5.2e-12Not foundNot found
HMMSmartSM00448no description 33 131 0.0089IPR001789Signal transduction response regulator, receiver region
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
O827981e-81ARR4_ARATH Two-component response regulator ARR4 OS=Arabidopsis thaliana GN=ARR4 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q2HIV31e-80Q2HIV3_ARATH At1g10470 OS=Arabidopsis thaliana GN=At1g10470 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G104702e-81K14492ARR-Atwo-component response regulator ARR-A family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:24991074..26433437 (-)A.thalianaChr1:2936528..3985215 (+)165
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:25518352..26276845 (+)B.rapaA09:1777452..2077156 (-)40
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1047034423273443957Chr1Subgenome_III(LF)171
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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