Basic Information
Gene Model:Bol036689
Gene Family:Protein Kinase Gene Families
Chromosome:C05
Scaffold:Scaffold000027
Sequence:
 | 
Gene Structure
Nucleotide Length:2058 bp
Transcript Length:1992 bp
Protein Length:663 aa
Strand:-
Location:C05: 25412645 : 25414702
Gene CDSs(2): 1-662 | 729-2058 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00069Pkinase 361 560 1.6e-30IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF01537Herpes_glycop_D 233 293 7.5e-07IPR002896Herpesvirus glycoprotein D
HMMPfamPF00560LRR_1 185 206 0.033IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 115 137 0.0046IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 139 161 0.003IPR001611Leucine-rich repeat
HMMPfamPF08263LRRNT_2 27 60 7.8e-07IPR013210Leucine-rich repeat, N-terminal
HMMPfamPF00560LRR_1 92 113 0.026IPR001611Leucine-rich repeat
superfamilySSF52058L domain-like 24 229 2.2e-30Not foundNot found
superfamilySSF56112Protein kinase-like 344 627 6.3e-59IPR011009Protein kinase-like domain
HMMSmartSM00220no description 357 636 1.2e-30IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00219no description 356 627 1.9e-11IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
Gene3DG3DSA:1.10.510.10no description 435 638 3.3e-35Not foundNot found
Gene3DG3DSA:3.30.200.20no description 361 433 6.7e-14Not foundNot found
Gene3DG3DSA:3.80.10.10no description 24 222 1.8e-33Not foundNot found
Segsegseg 279 307 NANot foundNot found
Segsegseg 578 593 NANot foundNot found
Segsegseg 231 246 NANot foundNot found
Segsegseg 249 276 NANot foundNot found
Segsegseg 3 24 NANot foundNot found
ProfileScanPS50011PROTEIN_KINASE_DOM 357 637 35.580IPR000719Protein kinase, catalytic domain
HMMPantherPTHR23258SERINE-THREONINE PRO 66 534 2e-154Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005515 Molecular Function protein binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q93Y061e-129Y5720_ARATH Probable inactive receptor kinase At5g67200 OS=Arabidopsis thaliana GN=At5g67200 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q940B90.0Q940B9_ARATH Putative receptor-kinase isolog OS=Arabidopsis thaliana GN=At1g10860 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_04781509e-54K13415BRI1--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5572(10 genes,7 taxa):Arabidopsis thalianaAT1G10850.1
ORTHOMCL5572(10 genes,7 taxa):Arabidopsis thalianaAT1G60630.1
ORTHOMCL5572(10 genes,7 taxa):Brassica oleraceaBol007406
ORTHOMCL5572(10 genes,7 taxa):Brassica oleraceaBol036689
ORTHOMCL5572(10 genes,7 taxa):Brassica rapaBra019897
ORTHOMCL5572(10 genes,7 taxa):Brassica rapaBra031492
ORTHOMCL5572(10 genes,7 taxa):Vitis viniferaGSVIVT01010230001
ORTHOMCL5572(10 genes,7 taxa):Populus trichocarpaPOPTR_0010s10740.1
ORTHOMCL5572(10 genes,7 taxa):Sorghum bicolorSb04g038340.1
ORTHOMCL5572(10 genes,7 taxa):Carica papayaevm.TU.supercontig_2.98
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:25164508..25520855 (-)A.thalianaChr1:22314170..22641016 (+)18
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:24736736..26272250 (+)B.rapaA06:4371111..5483120 (+)169
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1085036117473614613Chr1Subgenome_III(LF)171
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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