Basic Information
Gene Model:Bol036669
Gene Family:Protein Kinase Gene Families
Chromosome:C05
Scaffold:Scaffold000027
Sequence:
 | 
Gene Structure
Nucleotide Length:3891 bp
Transcript Length:2286 bp
Protein Length:761 aa
Strand:-
Location:C05: 25286923 : 25290813
Gene CDSs(16): 1-63 | 149-305 | 404-519 | 600-738 | 816-1087 | 1165-1523 | 1734-2203 | 2280-2345 | 2427-2492 | 2565-2636 | 2703-2774 | 2853-2924 | 3001-3066 | 3165-3236 | 3336-3465 | 3798-3891 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.80.10.10no description 25 234 7.5e-37Not foundNot found
Gene3DG3DSA:3.30.200.20no description 481 569 6.1e-13Not foundNot found
Gene3DG3DSA:1.10.510.10no description 570 760 6.9e-36Not foundNot found
Segsegseg 471 482 NANot foundNot found
Segsegseg 335 351 NANot foundNot found
Segsegseg 401 432 NANot foundNot found
Segsegseg 134 147 NANot foundNot found
Segsegseg 249 268 NANot foundNot found
Segsegseg 277 299 NANot foundNot found
ProfileScanPS50011PROTEIN_KINASE_DOM 490 761 32.471IPR000719Protein kinase, catalytic domain
HMMPantherPTHR23258SERINE-THREONINE PRO 1 759 1.1e-217Not foundNot found
HMMPantherPTHR23258:SF482PROTEIN KINASE-RELAT 1 759 1.1e-217Not foundNot found
HMMPfamPF00069Pkinase 490 757 1.3e-16IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF00560LRR_1 141 163 0.015IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 165 187 0.0078IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 117 139 0.02IPR001611Leucine-rich repeat
superfamilySSF56112Protein kinase-like 460 757 3e-62IPR011009Protein kinase-like domain
superfamilySSF52058L domain-like 25 235 9.2e-37Not foundNot found
HMMSmartSM00219no description 490 757 1.6e-11IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 490 761 4.8e-16IPR002290Serine/threonine-protein kinase domain
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005515 Molecular Function protein binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q8RWZ10.0SUB_ARATH Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1
TrEMBL
Best HitE_value Description
C0LGE30.0C0LGE3_ARATH Leucine-rich repeat receptor-like protein kinase (Fragment) OS=Arabidopsis thaliana GN=LRR-RLK PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
zma:1002830911e-55K13430PBS1serine/threonine-protein kinase PBS1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2293(14 genes,7 taxa):Arabidopsis thalianaAT1G11130.1
ORTHOMCL2293(14 genes,7 taxa):Arabidopsis thalianaAT1G11160.1
ORTHOMCL2293(14 genes,7 taxa):Arabidopsis thalianaAT1G61210.1
ORTHOMCL2293(14 genes,7 taxa):Brassica oleraceaBol013732
ORTHOMCL2293(14 genes,7 taxa):Brassica oleraceaBol035437
ORTHOMCL2293(14 genes,7 taxa):Brassica oleraceaBol036669
ORTHOMCL2293(14 genes,7 taxa):Brassica rapaBra019878
ORTHOMCL2293(14 genes,7 taxa):Brassica rapaBra031445
ORTHOMCL2293(14 genes,7 taxa):Brassica rapaBra031757
ORTHOMCL2293(14 genes,7 taxa):Vitis viniferaGSVIVT01002544001
ORTHOMCL2293(14 genes,7 taxa):Oryza sativaOs01t0780400-02
ORTHOMCL2293(14 genes,7 taxa):Populus trichocarpaPOPTR_0011s04530.1
ORTHOMCL2293(14 genes,7 taxa):Carica papayaevm.TU.supercontig_27.94
ORTHOMCL2293(14 genes,7 taxa):Carica papayaevm.TU.supercontig_27.95
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:25164508..25520855 (-)A.thalianaChr1:22314170..22641016 (+)18
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:24991074..25298436 (+)B.rapaA08:3787381..3997755 (+)16
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1113037228573727450Chr1Subgenome_III(LF)171
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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