Basic Information
Gene Model:Bol036615
Gene Family:Transcription Factor Families
Chromosome:C05
Scaffold:Scaffold000027
Sequence:
 | 
Gene Structure
Nucleotide Length:1026 bp
Transcript Length:1026 bp
Protein Length:341 aa
Strand:+
Location:C05: 24848217 : 24849242
Gene CDSs(1): 1-1026 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50863B3 185 289 14.057IPR003340Transcriptional factor B3
ProfileScanPS51032AP2_ERF 59 114 20.257IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:3.30.730.10no description 58 117 4.5e-16IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:2.40.330.10no description 172 301 8.5e-43Not foundNot found
superfamilySSF54171DNA-binding domain 58 117 2.3e-18IPR016177DNA-binding, integrase-type
HMMPfamPF02362B3 184 291 2.3e-36IPR003340Transcriptional factor B3
HMMPfamPF00847AP2 58 107 3.5e-12IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 59 120 7.9e-28IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9ZWM91e-175RAV1_ARATH AP2/ERF and B3 domain-containing transcription factor RAV1 OS=Arabidopsis thaliana GN=RAV1 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9SEJ01e-119B9SEJ0_RICCO DNA-binding protein RAV1, putative OS=Ricinus communis GN=RCOM_0705620 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G132601e-174K09287RAVRAV-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL8986(8 genes,7 taxa):Arabidopsis thalianaAT1G13260.1
ORTHOMCL8986(8 genes,7 taxa):Brassica oleraceaBol036615
ORTHOMCL8986(8 genes,7 taxa):Brassica rapaBra019821
ORTHOMCL8986(8 genes,7 taxa):Vitis viniferaGSVIVT01036447001
ORTHOMCL8986(8 genes,7 taxa):Oryza sativaOs01t0140700-00
ORTHOMCL8986(8 genes,7 taxa):Oryza sativaOs01t0693400-01
ORTHOMCL8986(8 genes,7 taxa):Sorghum bicolorSb09g027530.1
ORTHOMCL8986(8 genes,7 taxa):Carica papayaevm.TU.supercontig_46.145
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:24736736..26272250 (+)B.rapaA06:4371111..5483120 (+)169
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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