Basic Information
Gene Model:Bol036491
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000028
Sequence:
 | 
Gene Structure
Nucleotide Length:260 bp
Transcript Length:159 bp
Protein Length:52 aa
Strand:+
Location:C01: 20080996 : 20081255
Gene CDSs(2): 1-75 | 177-260 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR21659HYDROPHOBIC PROTEIN 1 52 3.2e-20IPR000612Uncharacterised protein family UPF0057
PatternScanPS01309UPF0057 8 23 NAIPR000612Uncharacterised protein family UPF0057
HMMPfamPF01679UPF0057 2 52 1.2e-20IPR000612Uncharacterised protein family UPF0057
Gene Ontology
GO TermGO TypeDescription
GO:0016021 Cellular Component integral to membrane
Swiss-Prot
Best HitE_value Description
Q9FE707e-16RC21_ARATH UPF0057 membrane protein At1g57550 OS=Arabidopsis thaliana GN=At1g57550 PE=2 SV=1
TrEMBL
Best HitE_value Description
A0MED01e-14A0MED0_ARATH Putative uncharacterized protein (Fragment) OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL22508(2 genes,2 taxa):Arabidopsis thalianaAT1G57550.1
ORTHOMCL22508(2 genes,2 taxa):Brassica oleraceaBol036491
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:19705347..22433011 (+)A.thalianaChr1:21263420..22327359 (+)61
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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