Basic Information
Gene Model:Bol036475
Gene Family:Protein tyrosine phosphatase (PTP) family
Chromosome:Cun
Scaffold:Scaffold000029
Sequence:
 | 
Gene Structure
Nucleotide Length:2021 bp
Transcript Length:1251 bp
Protein Length:416 aa
Strand:-
Location:Scaffold000029: 2491965 : 2493985
Gene CDSs(7): 1-141 | 219-320 | 392-640 | 1056-1244 | 1312-1425 | 1497-1673 | 1743-2021 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51182C2_TENSIN 241 400 16.884IPR014020Tensin phosphatase, C2 domain
ProfileScanPS51181PPASE_TENSIN 41 210 28.442IPR014019Phosphatase tensin type
Gene3DG3DSA:3.90.190.10no description 34 208 2.4e-63Not foundNot found
superfamilySSF52799(Phosphotyrosine pro 49 212 6.4e-39Not foundNot found
superfamilySSF49562C2 domain (Calcium/l 282 401 4.6e-22IPR008973C2 calcium/lipid-binding region, CaLB
PatternScanPS00383TYR_PHOSPHATASE_1 149 159 NAIPR016130Protein-tyrosine phosphatase, active site
HMMPfamPF10409PTEN_C2 331 399 9.6e-13IPR014020Tensin phosphatase, C2 domain
HMMPantherPTHR12305PHOSPHATASE WITH HOM 47 403 1.6e-299Not foundNot found
HMMPantherPTHR12305:SF10PTEN, ARATH 47 403 1.6e-299Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004725 Molecular Function protein tyrosine phosphatase activity
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Swiss-Prot
Best HitE_value Description
Q8T9S79e-52PTEN_DICDI Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN OS=Dictyostelium discoideum GN=pteN PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9FLZ50.0Q9FLZ5_ARATH Similarity to protein-tyrosine phosphatase OS=Arabidopsis thaliana GN=At5g39400/MUL8_80 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G394000.0K01110E3.1.3.67, PTENphosphatidylinositol-3,4,5-trisphosphate 3-phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL10614(8 genes,6 taxa):Arabidopsis thalianaAT5G39400.1
ORTHOMCL10614(8 genes,6 taxa):Brassica oleraceaBol036475
ORTHOMCL10614(8 genes,6 taxa):Brassica oleraceaBol040114
ORTHOMCL10614(8 genes,6 taxa):Brassica rapaBra028240
ORTHOMCL10614(8 genes,6 taxa):Brassica rapaBra028431
ORTHOMCL10614(8 genes,6 taxa):Vitis viniferaGSVIVT01011486001
ORTHOMCL10614(8 genes,6 taxa):Populus trichocarpaPOPTR_0017s12540.1
ORTHOMCL10614(8 genes,6 taxa):Carica papayaevm.TU.supercontig_14.140
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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