Basic Information
Gene Model:Bol036445
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000029
Sequence:
 | 
Gene Structure
Nucleotide Length:1691 bp
Transcript Length:1119 bp
Protein Length:372 aa
Strand:+
Location:Scaffold000029: 1911198 : 1912888
Gene CDSs(7): 1-215 | 287-352 | 431-544 | 690-945 | 1027-1185 | 1260-1411 | 1535-1691 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103481Multidrug resistance 54 167 4.2e-08Not foundNot found
superfamilySSF103481Multidrug resistance 233 344 1.2e-07Not foundNot found
HMMPfamPF00892DUF6 30 162 5.1e-09IPR000620Protein of unknown function DUF6, transmembrane
Segsegseg 170 183 NANot foundNot found
Segsegseg 61 66 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1631e-295NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9FL081e-170Q9FL08_ARATH Nodulin-like protein OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15904(4 genes,3 taxa):Arabidopsis thalianaAT5G40230.1
ORTHOMCL15904(4 genes,3 taxa):Brassica oleraceaBol036445
ORTHOMCL15904(4 genes,3 taxa):Brassica oleraceaBol036446
ORTHOMCL15904(4 genes,3 taxa):Brassica rapaBra028451
Tandem Duplication
ClusterGene Num.Gene List
Cluster_1324Bol036444 Bol036445 Bol036446 Bol036447 
Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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