Basic Information
Gene Model:Bol036444
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000029
Sequence:
 | 
Gene Structure
Nucleotide Length:1592 bp
Transcript Length:1101 bp
Protein Length:366 aa
Strand:+
Location:Scaffold000029: 1909218 : 1910809
Gene CDSs(7): 1-209 | 296-361 | 435-554 | 635-875 | 962-1120 | 1194-1345 | 1439-1592 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103481Multidrug resistance 232 339 2.3e-09Not foundNot found
superfamilySSF103481Multidrug resistance 52 165 1e-05Not foundNot found
HMMPfamPF00892DUF6 28 162 2.1e-06IPR000620Protein of unknown function DUF6, transmembrane
Segsegseg 178 198 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1634e-305NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9FL081e-168Q9FL08_ARATH Nodulin-like protein OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL19371(3 genes,3 taxa):Arabidopsis thalianaAT5G40240.1
ORTHOMCL19371(3 genes,3 taxa):Brassica oleraceaBol036444
ORTHOMCL19371(3 genes,3 taxa):Brassica rapaBra028452
Tandem Duplication
ClusterGene Num.Gene List
Cluster_1324Bol036444 Bol036445 Bol036446 Bol036447 
Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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