Basic Information
Gene Model:Bol036283
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000030_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:2324 bp
Transcript Length:1569 bp
Protein Length:522 aa
Strand:-
Location:C09: 3881204 : 3883527
Gene CDSs(6): 1-133 | 564-725 | 820-953 | 1031-1189 | 1267-1375 | 1453-2324 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50110RESPONSE_REGULATORY 20 138 26.633IPR001789Signal transduction response regulator, receiver region
ProfileScanPS51017CCT 441 483 15.170IPR010402CCT domain
HMMPantherPTHR23283SENSOR HISTIDINE KIN 15 143 7.3e-12Not foundNot found
Gene3DG3DSA:3.40.50.2300no description 8 148 1.2e-21Not foundNot found
Segsegseg 498 509 NANot foundNot found
HMMSmartSM00448no description 19 134 2.5e-18IPR001789Signal transduction response regulator, receiver region
superfamilySSF52172CheY-like 16 145 3e-25IPR011006CheY-like
HMMPfamPF06203CCT 441 485 8.5e-21IPR010402CCT domain
HMMPfamPF00072Response_reg 21 135 1.1e-15IPR001789Signal transduction response regulator, receiver region
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9LKL20.0APRR1_ARATH Two-component response regulator-like APRR1 OS=Arabidopsis thaliana GN=APRR1 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9RLV61e-141B9RLV6_RICCO Sensory transduction histidine kinase, putative OS=Ricinus communis GN=RCOM_1471230 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G613800.0K12127TOC1, APRR1pseudo-response regulator 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2221(15 genes,8 taxa):Arabidopsis thalianaAT5G61380.1
ORTHOMCL2221(15 genes,8 taxa):Brassica oleraceaBol017021
ORTHOMCL2221(15 genes,8 taxa):Brassica oleraceaBol036283
ORTHOMCL2221(15 genes,8 taxa):Brassica rapaBra012964
ORTHOMCL2221(15 genes,8 taxa):Brassica rapaBra035933
ORTHOMCL2221(15 genes,8 taxa):Vitis viniferaGSVIVT01007965001
ORTHOMCL2221(15 genes,8 taxa):Oryza sativaOs02t0618200-01
ORTHOMCL2221(15 genes,8 taxa):Populus trichocarpaPOPTR_0015s07300.1
ORTHOMCL2221(15 genes,8 taxa):Populus trichocarpaPOPTR_0015s07310.1
ORTHOMCL2221(15 genes,8 taxa):Populus trichocarpaPOPTR_0015s07310.2
ORTHOMCL2221(15 genes,8 taxa):Populus trichocarpaPOPTR_0015s07310.3
ORTHOMCL2221(15 genes,8 taxa):Populus trichocarpaPOPTR_0015s07310.4
ORTHOMCL2221(15 genes,8 taxa):Populus trichocarpaPOPTR_0015s07310.5
ORTHOMCL2221(15 genes,8 taxa):Sorghum bicolorSb04g026190.1
ORTHOMCL2221(15 genes,8 taxa):Carica papayaevm.TU.supercontig_13.284
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:3639352..4045482 (-)A.thalianaChr5:24472639..24915214 (+)35
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:3125539..3940459 (+)B.rapaA09:7722370..8314838 (-)74
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
XAT5G613802467506424678550Chr5Subgenome_I32
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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