Basic Information
Gene Model:Bol036225
Gene Family:Amino Acid/Auxin Permease AAAP Family
Chromosome:C09
Scaffold:Scaffold000030_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:2655 bp
Transcript Length:1404 bp
Protein Length:467 aa
Strand:+
Location:C09: 4264304 : 4266958
Gene CDSs(7): 1-408 | 906-1133 | 1219-1352 | 1503-1723 | 1884-1977 | 2240-2476 | 2574-2655 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR22950AMINO ACID TRANSPORT 26 462 2.8e-89Not foundNot found
HMMPfamPF01490Aa_trans 26 463 1.2e-115IPR013057Amino acid transporter, transmembrane
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9FF990.0AAP7_ARATH Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7Q9G11e-171A7Q9G1_VITVI Chromosome chr19 scaffold_66, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00033460001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ppp:PHYPADRAFT_1157144e-09K14209SLC36A1, PAT1solute carrier family 36 (proton-coupled amino acid transporter), member 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2678(14 genes,8 taxa):Arabidopsis thalianaAT5G23810.1
ORTHOMCL2678(14 genes,8 taxa):Brassica oleraceaBol036225
ORTHOMCL2678(14 genes,8 taxa):Brassica rapaBra026481
ORTHOMCL2678(14 genes,8 taxa):Vitis viniferaGSVIVT01014771001
ORTHOMCL2678(14 genes,8 taxa):Vitis viniferaGSVIVT01014772001
ORTHOMCL2678(14 genes,8 taxa):Oryza sativaOs04t0470700-01
ORTHOMCL2678(14 genes,8 taxa):Oryza sativaOs04t0659800-00
ORTHOMCL2678(14 genes,8 taxa):Populus trichocarpaPOPTR_0001s47390.1
ORTHOMCL2678(14 genes,8 taxa):Populus trichocarpaPOPTR_0011s16990.1
ORTHOMCL2678(14 genes,8 taxa):Sorghum bicolorSb06g019660.1
ORTHOMCL2678(14 genes,8 taxa):Sorghum bicolorSb06g031530.1
ORTHOMCL2678(14 genes,8 taxa):Carica papayaevm.TU.supercontig_12.91
ORTHOMCL2678(14 genes,8 taxa):Carica papayaevm.TU.supercontig_12.92
ORTHOMCL2678(14 genes,8 taxa):Carica papayaevm.TU.supercontig_12.93
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:4054082..5026702 (+)A.thalianaChr5:7742940..8987787 (+)83
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:4093099..5022761 (+)B.rapaA06:11227872..12577616 (+)64
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
QAT5G2381080283788030163Chr5Subgenome_I81
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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