Basic Information
Gene Model:Bol036174
Gene Family:Transcription Factor Families
Chromosome:C09
Scaffold:Scaffold000030_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:638 bp
Transcript Length:546 bp
Protein Length:181 aa
Strand:-
Location:C09: 4644710 : 4645347
Gene CDSs(2): 1-83 | 176-638 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF54171DNA-binding domain 6 67 9.4e-22IPR016177DNA-binding, integrase-type
Segsegseg 95 111 NANot foundNot found
Segsegseg 72 86 NANot foundNot found
Segsegseg 40 52 NANot foundNot found
Gene3DG3DSA:3.30.730.10no description 6 67 3.6e-22IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMPfamPF00847AP2 6 57 4.7e-19IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 7 70 4.3e-39IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS51032AP2_ERF 7 64 20.613IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q94AW55e-76ERF03_ARATH Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9HAT96e-60B9HAT9_POPTR AP2/ERF domain-containing transcription factor OS=Populus trichocarpa GN=DREB26 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G780803e-18K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL26931(2 genes,2 taxa):Brassica oleraceaBol036174
ORTHOMCL26931(2 genes,2 taxa):Brassica rapaBra036536
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:4054082..5026702 (+)A.thalianaChr5:7742940..8987787 (+)83
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:4434047..5026702 (+)B.rapaA09:7722370..7951360 (+)35
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
QAT5G2519087067908707748Chr5Subgenome_I81
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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