Basic Information
Gene Model:Bol036114
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000030_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:1213 bp
Transcript Length:762 bp
Protein Length:253 aa
Strand:+
Location:C02: 5679879 : 5681091
Gene CDSs(5): 1-174 | 251-328 | 430-585 | 666-845 | 1040-1213 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HAMAPMF_00580CH10_MF_00580 159 253 20.976IPR001476Chaperonin Cpn10, subgroup
Segsegseg 14 31 NANot foundNot found
HAMAPMF_00580CH10_MF_00580 61 153 22.469IPR001476Chaperonin Cpn10, subgroup
HMMPantherPTHR10772GROES CHAPERONIN 150 253 2e-40IPR001476Chaperonin Cpn10, subgroup
Gene3DG3DSA:2.30.33.40no description 156 252 3.7e-23IPR020818Chaperonin Cpn10
Gene3DG3DSA:2.30.33.40no description 58 154 3.4e-26IPR020818Chaperonin Cpn10
HMMSmartSM00883no description 159 252 7.5e-40IPR001476Chaperonin Cpn10, subgroup
HMMSmartSM00883no description 61 152 1.2e-39IPR001476Chaperonin Cpn10, subgroup
superfamilySSF50129GroES-like 158 253 2.7e-29IPR011032GroES-like
superfamilySSF50129GroES-like 58 154 2.9e-31IPR011032GroES-like
HMMPIRPIRSF038157Chaperonin 21, chlor 1 253 9e-161IPR017416Chaperonin 21, chloroplast
HMMPfamPF00166Cpn10 159 252 1.8e-39IPR020818Chaperonin Cpn10
PatternScanPS00681CHAPERONINS_CPN10 160 184 NAIPR018369Chaperonin Cpn10, conserved site
HMMPfamPF00166Cpn10 61 152 1.5e-41IPR020818Chaperonin Cpn10
PatternScanPS00681CHAPERONINS_CPN10 62 86 NAIPR018369Chaperonin Cpn10, conserved site
Gene Ontology
GO TermGO TypeDescription
GO:0005524 Molecular Function ATP binding
GO:0005737 Cellular Component cytoplasm
GO:0006457 Biological Process protein folding
Swiss-Prot
Best HitE_value Description
O652821e-130CH10C_ARATH 20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q8LK521e-113Q8LK52_GOSHI Cp10-like protein OS=Gossypium hirsutum GN=CLP PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ppp:PHYPADRAFT_2283424e-73K04078groES, HSPE1chaperonin GroES
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL26921(2 genes,2 taxa):Brassica oleraceaBol036114
ORTHOMCL26921(2 genes,2 taxa):Brassica rapaBra020124
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:5403708..6775945 (+)A.thalianaChr5:6826506..7697927 (+)107
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:4322905..10141266 (+)B.rapaA10:6145708..10195845 (+)263
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G2072070146747016481Chr5Subgenome_I556
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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