Basic Information
Gene Model:Bol036113
Gene Family:Transcription Factor Families
Chromosome:C02
Scaffold:Scaffold000030_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:4532 bp
Transcript Length:1644 bp
Protein Length:547 aa
Strand:-
Location:C02: 5681887 : 5686418
Gene CDSs(11): 1-123 | 212-307 | 382-438 | 690-845 | 932-1016 | 1097-1187 | 1256-1420 | 1508-1703 | 2040-2178 | 2261-2615 | 4352-4532 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 239 248 NANot foundNot found
ProfileScanPS50863B3 115 217 12.196IPR003340Transcriptional factor B3
Segsegseg 224 232 NANot foundNot found
HMMPfamPF06507Auxin_resp 241 323 3e-56IPR010525Auxin response factor
HMMPfamPF02362B3 114 219 1e-31IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 102 231 9.4e-42Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0005634 Cellular Component nucleus
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0009725 Biological Process response to hormone stimulus
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
P930220.0ARFG_ARATH Auxin response factor 7 OS=Arabidopsis thaliana GN=ARF7 PE=1 SV=2
TrEMBL
Best HitE_value Description
B9RR610.0B9RR61_RICCO Auxin response factor, putative OS=Ricinus communis GN=RCOM_0710450 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G207300.0K14486K14486, ARFauxin response factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL424(29 genes,8 taxa):Arabidopsis thalianaAT1G19220.1
ORTHOMCL424(29 genes,8 taxa):Arabidopsis thalianaAT5G20730.1
ORTHOMCL424(29 genes,8 taxa):Brassica oleraceaBol013157
ORTHOMCL424(29 genes,8 taxa):Brassica oleraceaBol026834
ORTHOMCL424(29 genes,8 taxa):Brassica oleraceaBol035795
ORTHOMCL424(29 genes,8 taxa):Brassica oleraceaBol036113
ORTHOMCL424(29 genes,8 taxa):Brassica rapaBra002327
ORTHOMCL424(29 genes,8 taxa):Brassica rapaBra016517
ORTHOMCL424(29 genes,8 taxa):Brassica rapaBra020125
ORTHOMCL424(29 genes,8 taxa):Brassica rapaBra025720
ORTHOMCL424(29 genes,8 taxa):Vitis viniferaGSVIVT01015035001
ORTHOMCL424(29 genes,8 taxa):Vitis viniferaGSVIVT01032251001
ORTHOMCL424(29 genes,8 taxa):Oryza sativaOs02t0141100-00
ORTHOMCL424(29 genes,8 taxa):Oryza sativaOs06t0702600-01
ORTHOMCL424(29 genes,8 taxa):Oryza sativaOs08t0520550-01
ORTHOMCL424(29 genes,8 taxa):Populus trichocarpaPOPTR_0006s07740.1
ORTHOMCL424(29 genes,8 taxa):Populus trichocarpaPOPTR_0006s14070.1
ORTHOMCL424(29 genes,8 taxa):Populus trichocarpaPOPTR_0006s14070.2
ORTHOMCL424(29 genes,8 taxa):Populus trichocarpaPOPTR_0006s14070.3
ORTHOMCL424(29 genes,8 taxa):Populus trichocarpaPOPTR_0006s14070.4
ORTHOMCL424(29 genes,8 taxa):Populus trichocarpaPOPTR_0006s14070.5
ORTHOMCL424(29 genes,8 taxa):Populus trichocarpaPOPTR_0018s07420.1
ORTHOMCL424(29 genes,8 taxa):Populus trichocarpaPOPTR_0018s14300.1
ORTHOMCL424(29 genes,8 taxa):Sorghum bicolorSb04g003240.1
ORTHOMCL424(29 genes,8 taxa):Sorghum bicolorSb07g027080.1
ORTHOMCL424(29 genes,8 taxa):Sorghum bicolorSb10g006440.1
ORTHOMCL424(29 genes,8 taxa):Sorghum bicolorSb10g029130.1
ORTHOMCL424(29 genes,8 taxa):Carica papayaevm.TU.supercontig_115.29
ORTHOMCL424(29 genes,8 taxa):Carica papayaevm.TU.supercontig_261.2
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:5403708..6775945 (+)A.thalianaChr5:6826506..7697927 (+)107
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:4322905..10141266 (+)B.rapaA10:6145708..10195845 (+)263
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G2073070164707022113Chr5Subgenome_I556
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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