Basic Information
Gene Model:Bol036109
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000030_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:764 bp
Transcript Length:498 bp
Protein Length:165 aa
Strand:+
Location:C02: 5726879 : 5727642
Gene CDSs(2): 1-32 | 299-764 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02519Auxin_inducible 81 143 4.3e-36IPR003676Auxin responsive SAUR protein
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
P322952e-15ARG7_PHAAU Indole-3-acetic acid-induced protein ARG7 OS=Phaseolus aureus GN=ARG7 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q8GWV61e-77Q8GWV6_ARATH Putative uncharacterized protein At5g20810/T1M15_210 OS=Arabidopsis thaliana GN=At5g20810/T1M15_210 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G208107e-75K14488SAURSAUR family protein
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL26920(2 genes,2 taxa):Brassica oleraceaBol036109
ORTHOMCL26920(2 genes,2 taxa):Brassica rapaBra020127
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:5403708..6775945 (+)A.thalianaChr5:6826506..7697927 (+)107
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:4322905..10141266 (+)B.rapaA10:6145708..10195845 (+)263
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G2081070438987045712Chr5Subgenome_I556
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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