Basic Information
Gene Model:Bol036017
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000030_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:5778 bp
Transcript Length:4647 bp
Protein Length:1548 aa
Strand:+
Location:C02: 6566830 : 6572607
Gene CDSs(9): 1-899 | 985-1458 | 1552-1580 | 1679-2148 | 2238-2362 | 2461-2740 | 2949-3876 | 3986-4672 | 5024-5778 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 1420 1426 NANot foundNot found
Segsegseg 787 793 NANot foundNot found
Segsegseg 629 646 NANot foundNot found
Segsegseg 112 145 NANot foundNot found
Segsegseg 7 17 NANot foundNot found
ProfileScanPS50827DDT 178 238 14.625IPR018501DDT domain superfamily
ProfileScanPS50016ZF_PHD_2 398 445 9.766IPR019787Zinc finger, PHD-finger
Gene3DG3DSA:3.30.40.10no description 1221 1284 5.6e-09Not foundNot found
Gene3DG3DSA:3.30.40.10no description 374 444 1.1e-15Not foundNot found
HMMPantherPTHR13793PHD FINGER PROTEINS 413 447 3.1e-05Not foundNot found
HMMPantherPTHR13793:SF23MIXED-LINEAGE LEUKEM 413 447 3.1e-05Not foundNot found
superfamilySSF57903FYVE/PHD zinc finger 1492 1545 2.1e-06IPR011011Zinc finger, FYVE/PHD-type
superfamilySSF57903FYVE/PHD zinc finger 392 461 2.4e-16IPR011011Zinc finger, FYVE/PHD-type
superfamilySSF57903FYVE/PHD zinc finger 1221 1283 3.9e-08IPR011011Zinc finger, FYVE/PHD-type
HMMSmartSM00249no description 1499 1545 1.1IPR001965Zinc finger, PHD-type
HMMSmartSM00249no description 1228 1276 1.4IPR001965Zinc finger, PHD-type
HMMSmartSM00249no description 400 443 3.9e-11IPR001965Zinc finger, PHD-type
HMMSmartSM00571no description 178 238 5.4e-17IPR018500DDT domain, subgroup
PatternScanPS01359ZF_PHD_1 401 442 NAIPR019786Zinc finger, PHD-type, conserved site
HMMPfamPF02791DDT 178 238 1.6e-07IPR004022DDT domain
HMMPfamPF00628PHD 400 445 2.5e-12IPR019787Zinc finger, PHD-finger
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
Q128302e-10BPTF_HUMAN Nucleosome-remodeling factor subunit BPTF OS=Homo sapiens GN=BPTF PE=1 SV=3
TrEMBL
Best HitE_value Description
Q9FNI50.0Q9FNI5_ARATH Gb|AAC80581.1 OS=Arabidopsis thaliana PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
tca:1001417901e-18K11728BPTF, E(bx)nucleosome-remodeling factor subunit BPTF
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2195(15 genes,8 taxa):Arabidopsis thalianaAT5G22760.1
ORTHOMCL2195(15 genes,8 taxa):Arabidopsis thalianaAT5G35210.1
ORTHOMCL2195(15 genes,8 taxa):Brassica oleraceaBol009090
ORTHOMCL2195(15 genes,8 taxa):Brassica oleraceaBol025847
ORTHOMCL2195(15 genes,8 taxa):Brassica oleraceaBol036017
ORTHOMCL2195(15 genes,8 taxa):Brassica rapaBra006635
ORTHOMCL2195(15 genes,8 taxa):Brassica rapaBra020213
ORTHOMCL2195(15 genes,8 taxa):Brassica rapaBra037601
ORTHOMCL2195(15 genes,8 taxa):Vitis viniferaGSVIVT01031411001
ORTHOMCL2195(15 genes,8 taxa):Oryza sativaOs11t0148700-01
ORTHOMCL2195(15 genes,8 taxa):Populus trichocarpaPOPTR_0004s20090.1
ORTHOMCL2195(15 genes,8 taxa):Populus trichocarpaPOPTR_0009s15240.1
ORTHOMCL2195(15 genes,8 taxa):Sorghum bicolorSb05g002930.1
ORTHOMCL2195(15 genes,8 taxa):Sorghum bicolorSb08g002920.1
ORTHOMCL2195(15 genes,8 taxa):Carica papayaevm.TU.supercontig_47.58
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:5403708..6775945 (+)A.thalianaChr5:6826506..7697927 (+)107
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:4322905..10141266 (+)B.rapaA10:6145708..10195845 (+)263
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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