Basic Information
Gene Model:Bol035945
Gene Family:Transcription Factor Families
Chromosome:C02
Scaffold:Scaffold000031_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:1146 bp
Transcript Length:582 bp
Protein Length:193 aa
Strand:+
Location:C02: 25822232 : 25823377
Gene CDSs(5): 1-135 | 195-223 | 526-688 | 813-1019 | 1099-1146 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02362B3 93 187 5e-19IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 84 187 7.3e-06Not foundNot found
ProfileScanPS50863B3 94 185 11.928IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9FMZ41e-71Y5270_ARATH B3 domain-containing protein At5g42700 OS=Arabidopsis thaliana GN=At5g42700 PE=2 SV=2
TrEMBL
Best HitE_value Description
B9NGP15e-54B9NGP1_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_942100 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL13161(6 genes,5 taxa):Arabidopsis thalianaAT5G42700.1
ORTHOMCL13161(6 genes,5 taxa):Brassica oleraceaBol035945
ORTHOMCL13161(6 genes,5 taxa):Brassica rapaBra035324
ORTHOMCL13161(6 genes,5 taxa):Vitis viniferaGSVIVT01009519001
ORTHOMCL13161(6 genes,5 taxa):Populus trichocarpaPOPTR_0014s03120.1
ORTHOMCL13161(6 genes,5 taxa):Populus trichocarpaPOPTR_0014s03130.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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