Basic Information
Gene Model:Bol035903
Gene Family:Protein Kinase Gene Families
Chromosome:C09
Scaffold:Scaffold000032
Sequence:
 | 
Gene Structure
Nucleotide Length:1962 bp
Transcript Length:1962 bp
Protein Length:653 aa
Strand:-
Location:C09: 30818960 : 30820921
Gene CDSs(1): 1-1962 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF49899Concanavalin A-like 17 255 4.3e-60IPR008985Concanavalin A-like lectin/glucanase
superfamilySSF56112Protein kinase-like 302 606 7.7e-82IPR011009Protein kinase-like domain
ProfileScanPS50011PROTEIN_KINASE_DOM 332 615 38.237IPR000719Protein kinase, catalytic domain
HMMPfamPF00069Pkinase 332 530 7.4e-56IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF00139Lectin_legB 18 251 2.5e-77IPR001220Legume lectin, beta chain
Segsegseg 291 302 NANot foundNot found
Segsegseg 626 649 NANot foundNot found
Segsegseg 273 288 NANot foundNot found
HMMSmartSM00219no description 332 606 1.7e-35IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 332 612 2.6e-43IPR002290Serine/threonine-protein kinase domain
Gene3DG3DSA:1.10.510.10no description 412 607 3e-49Not foundNot found
Gene3DG3DSA:2.60.120.200no description 17 269 2.9e-55IPR013320Concanavalin A-like lectin/glucanase, subgroup
Gene3DG3DSA:3.30.200.20no description 313 409 1.6e-25Not foundNot found
PatternScanPS00107PROTEIN_KINASE_ATP 338 362 NAIPR017441Protein kinase, ATP binding site
PatternScanPS00108PROTEIN_KINASE_ST 453 465 NAIPR008271Serine/threonine-protein kinase, active site
Coilcoilcoiled-coil 290 311 NANot foundNot found
HMMPantherPTHR23258:SF438RECEPTOR LECTIN KINA 145 629 4e-174Not foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 145 629 4e-174Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005488 Molecular Function binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q66GN24e-84LRKA3_ARATH Lectin-domain containing receptor kinase A4.3 OS=Arabidopsis thaliana GN=LECRKA4.3 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9LXA50.0Q9LXA5_ARATH Lectin-like protein kinase-like OS=Arabidopsis thaliana GN=F12B17_120 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL258(37 genes,8 taxa):Arabidopsis thalianaAT5G10530.1
ORTHOMCL258(37 genes,8 taxa):Arabidopsis thalianaAT5G65600.1
ORTHOMCL258(37 genes,8 taxa):Brassica oleraceaBol017219
ORTHOMCL258(37 genes,8 taxa):Brassica oleraceaBol024664
ORTHOMCL258(37 genes,8 taxa):Brassica oleraceaBol035903
ORTHOMCL258(37 genes,8 taxa):Brassica rapaBra006066
ORTHOMCL258(37 genes,8 taxa):Brassica rapaBra018308
ORTHOMCL258(37 genes,8 taxa):Brassica rapaBra024400
ORTHOMCL258(37 genes,8 taxa):Brassica rapaBra028580
ORTHOMCL258(37 genes,8 taxa):Vitis viniferaGSVIVT01001702001
ORTHOMCL258(37 genes,8 taxa):Oryza sativaOs01t0779300-01
ORTHOMCL258(37 genes,8 taxa):Oryza sativaOs07t0569550-00
ORTHOMCL258(37 genes,8 taxa):Oryza sativaOs08t0123900-00
ORTHOMCL258(37 genes,8 taxa):Oryza sativaOs08t0124000-01
ORTHOMCL258(37 genes,8 taxa):Oryza sativaOs08t0124000-02
ORTHOMCL258(37 genes,8 taxa):Oryza sativaOs08t0124100-01
ORTHOMCL258(37 genes,8 taxa):Oryza sativaOs08t0124500-01
ORTHOMCL258(37 genes,8 taxa):Oryza sativaOs08t0124700-01
ORTHOMCL258(37 genes,8 taxa):Oryza sativaOs08t0124900-00
ORTHOMCL258(37 genes,8 taxa):Oryza sativaOs08t0125132-00
ORTHOMCL258(37 genes,8 taxa):Oryza sativaOs08t0125200-01
ORTHOMCL258(37 genes,8 taxa):Oryza sativaOs08t0125800-01
ORTHOMCL258(37 genes,8 taxa):Populus trichocarpaPOPTR_0001s29000.1
ORTHOMCL258(37 genes,8 taxa):Populus trichocarpaPOPTR_0001s29050.1
ORTHOMCL258(37 genes,8 taxa):Populus trichocarpaPOPTR_0001s29080.1
ORTHOMCL258(37 genes,8 taxa):Populus trichocarpaPOPTR_0001s29080.2
ORTHOMCL258(37 genes,8 taxa):Populus trichocarpaPOPTR_0001s29090.1
ORTHOMCL258(37 genes,8 taxa):Populus trichocarpaPOPTR_0003s09340.1
ORTHOMCL258(37 genes,8 taxa):Populus trichocarpaPOPTR_0007s14980.1
ORTHOMCL258(37 genes,8 taxa):Populus trichocarpaPOPTR_0007s14990.1
ORTHOMCL258(37 genes,8 taxa):Populus trichocarpaPOPTR_0007s15000.1
ORTHOMCL258(37 genes,8 taxa):Populus trichocarpaPOPTR_0007s15010.1
ORTHOMCL258(37 genes,8 taxa):Sorghum bicolorSb01g006670.1
ORTHOMCL258(37 genes,8 taxa):Sorghum bicolorSb03g036370.1
ORTHOMCL258(37 genes,8 taxa):Carica papayaevm.TU.supercontig_129.10
ORTHOMCL258(37 genes,8 taxa):Carica papayaevm.TU.supercontig_129.11
ORTHOMCL258(37 genes,8 taxa):Carica papayaevm.TU.supercontig_129.9
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:30376081..30875920 (-)A.thalianaChr5:6518838..6755080 (+)47
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:27967024..32004612 (+)B.rapaA10:6145708..8231502 (-)258
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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