Basic Information
Gene Model:Bol035718
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000032
Sequence:
 | 
Gene Structure
Nucleotide Length:2775 bp
Transcript Length:2004 bp
Protein Length:667 aa
Strand:+
Location:C09: 29142111 : 29144885
Gene CDSs(3): 1-301 | 669-951 | 1356-2775 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00249no description 611 657 1.6e-05IPR001965Zinc finger, PHD-type
PatternScanPS01359ZF_PHD_1 612 656 NAIPR019786Zinc finger, PHD-type, conserved site
superfamilySSF57903FYVE/PHD zinc finger 603 664 7.7e-11IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.10no description 594 665 8.1e-16Not foundNot found
Segsegseg 596 608 NANot foundNot found
Segsegseg 424 428 NANot foundNot found
HMMPfamPF00628PHD 611 659 2.6e-10IPR019787Zinc finger, PHD-finger
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
Q9C8101e-70Y1342_ARATH PHD finger protein At1g33420 OS=Arabidopsis thaliana GN=At1g33420 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9FMS50.0Q9FMS5_ARATH Similarity to unknown protein OS=Arabidopsis thaliana GN=At5g22260 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
tad:TRIADDRAFT_618652e-06K09189MLL5myeloid/lymphoid or mixed-lineage leukemia protein 5
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL12014(7 genes,7 taxa):Arabidopsis thalianaAT5G22260.1
ORTHOMCL12014(7 genes,7 taxa):Brassica oleraceaBol035718
ORTHOMCL12014(7 genes,7 taxa):Brassica rapaBra002401
ORTHOMCL12014(7 genes,7 taxa):Vitis viniferaGSVIVT01011588001
ORTHOMCL12014(7 genes,7 taxa):Populus trichocarpaPOPTR_0010s11170.1
ORTHOMCL12014(7 genes,7 taxa):Sorghum bicolorSb02g026200.1
ORTHOMCL12014(7 genes,7 taxa):Carica papayaevm.TU.supercontig_2.110
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:28446845..30360401 (-)A.thalianaChr5:6802372..7697927 (+)131
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:27967024..32004612 (+)B.rapaA10:6145708..8231502 (-)258
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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