Basic Information
Gene Model:Bol035650
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000033
Sequence:
 | 
Gene Structure
Nucleotide Length:1105 bp
Transcript Length:528 bp
Protein Length:175 aa
Strand:+
Location:C03: 36489538 : 36490642
Gene CDSs(5): 1-63 | 278-364 | 441-508 | 626-761 | 932-1105 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF52788Phosphotyrosine prot 8 171 3.2e-47IPR017867Protein-tyrosine phosphatase, low molecular weight
HMMPantherPTHR11717LOW MOLECULAR WEIGHT 19 175 7.3e-65IPR017867Protein-tyrosine phosphatase, low molecular weight
HMMPantherPTHR11717:SF7LOW MOLECULAR WEIGHT 19 175 7.3e-65Not foundNot found
HMMPfamPF01451LMWPc 13 170 2.3e-50IPR017867Protein-tyrosine phosphatase, low molecular weight
HMMSmartSM00226no description 13 170 2.2e-47IPR017867Protein-tyrosine phosphatase, low molecular weight
Gene3DG3DSA:3.40.50.270no description 6 172 7.2e-49Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004725 Molecular Function protein tyrosine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
Swiss-Prot
Best HitE_value Description
Q555356e-36Y328_SYNY3 Putative low molecular weight protein-tyrosine-phosphatase slr0328 OS=Synechocystis sp. (strain PCC 6803) GN=slr0328 PE=3 SV=1
TrEMBL
Best HitE_value Description
Q67YE71e-94Q67YE7_ARATH Protein-tyrosine-phosphatase-like protein OS=Arabidopsis thaliana GN=At3g44620 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL7974(9 genes,7 taxa):Arabidopsis thalianaAT3G44620.1
ORTHOMCL7974(9 genes,7 taxa):Brassica oleraceaBol035650
ORTHOMCL7974(9 genes,7 taxa):Brassica rapaBra019425
ORTHOMCL7974(9 genes,7 taxa):Vitis viniferaGSVIVT01031373001
ORTHOMCL7974(9 genes,7 taxa):Oryza sativaOs08t0557400-01
ORTHOMCL7974(9 genes,7 taxa):Populus trichocarpaPOPTR_0004s19750.1
ORTHOMCL7974(9 genes,7 taxa):Populus trichocarpaPOPTR_0009s14920.1
ORTHOMCL7974(9 genes,7 taxa):Populus trichocarpaPOPTR_0009s14920.2
ORTHOMCL7974(9 genes,7 taxa):Sorghum bicolorSb07g024360.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:36444610..36946542 (-)A.thalianaChr3:15660859..15911474 (+)12
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:36405744..39265891 (+)B.rapaA02:3476224..4118672 (-)11
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
MAT3G446201619382916195833Chr3Subgenome_III(LF)117
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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