Basic Information
Gene Model:Bol035541
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000034_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:2743 bp
Transcript Length:1812 bp
Protein Length:603 aa
Strand:-
Location:C03: 21265518 : 21268260
Gene CDSs(10): 1-120 | 198-707 | 785-970 | 1035-1230 | 1312-1616 | 1885-1974 | 2062-2179 | 2264-2361 | 2439-2524 | 2641-2743 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00005ABC_tran 103 292 8.9e-24IPR003439ABC transporter-like
HMMPfamPF00005ABC_tran 374 542 2.2e-27IPR003439ABC transporter-like
HMMPfamPF04068RLI 6 37 1.7e-14IPR007209RNase L inhibitor RLI, possible metal-binding region
HMMPfamPF00037Fer4 48 71 8.9e-10IPR0014504Fe-4S ferredoxin, iron-sulphur binding, subgroup
HMMPantherPTHR19248ATP-BINDING TRANSPOR 1 603 0Not foundNot found
HMMPantherPTHR19248:SF9RNASE L INHIBITOR 1 603 0Not foundNot found
superfamilySSF548624Fe-4S ferredoxins 8 159 8.4e-20Not foundNot found
superfamilySSF52540P-loop containing nu 351 541 6.6e-32Not foundNot found
superfamilySSF52540P-loop containing nu 101 291 2.5e-32Not foundNot found
PatternScanPS001984FE4S_FER_1 55 66 NAIPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved site
ProfileScanPS513794FE4S_FER_2 46 75 10.617IPR0178964Fe-4S ferredoxin, iron-sulpur binding domain
ProfileScanPS513794FE4S_FER_2 7 31 6.391IPR0178964Fe-4S ferredoxin, iron-sulpur binding domain
ProfileScanPS50893ABC_TRANSPORTER_2 344 566 14.579IPR003439ABC transporter-like
ProfileScanPS50893ABC_TRANSPORTER_2 70 315 13.706IPR003439ABC transporter-like
HMMSmartSM00382no description 102 294 4.5e-09IPR003593ATPase, AAA+ type, core
HMMSmartSM00382no description 373 544 6.1e-13IPR003593ATPase, AAA+ type, core
Gene3DG3DSA:3.40.50.300no description 349 595 9.7e-27Not foundNot found
Gene3DG3DSA:3.40.50.300no description 101 291 3.2e-24Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000166 Molecular Function nucleotide binding
GO:0005524 Molecular Function ATP binding
GO:0009055 Molecular Function electron carrier activity
GO:0016887 Molecular Function ATPase activity
GO:0017111 Molecular Function nucleoside-triphosphatase activity
GO:0051536 Molecular Function iron-sulfur cluster binding
Swiss-Prot
Best HitE_value Description
Q9LID60.0AB1E_ARATH ABC transporter E family member 1 OS=Arabidopsis thaliana GN=ABCE1 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7QKL90.0A7QKL9_VITVI Chromosome chr2 scaffold_113, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00001176001 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL926(21 genes,8 taxa):Arabidopsis thalianaAT4G19210.1
ORTHOMCL926(21 genes,8 taxa):Brassica oleraceaBol009339
ORTHOMCL926(21 genes,8 taxa):Brassica oleraceaBol024386
ORTHOMCL926(21 genes,8 taxa):Brassica oleraceaBol029875
ORTHOMCL926(21 genes,8 taxa):Brassica oleraceaBol035541
ORTHOMCL926(21 genes,8 taxa):Brassica rapaBra001515
ORTHOMCL926(21 genes,8 taxa):Brassica rapaBra012553
ORTHOMCL926(21 genes,8 taxa):Brassica rapaBra013385
ORTHOMCL926(21 genes,8 taxa):Brassica rapaBra020966
ORTHOMCL926(21 genes,8 taxa):Brassica rapaBra021494
ORTHOMCL926(21 genes,8 taxa):Vitis viniferaGSVIVT01036876001
ORTHOMCL926(21 genes,8 taxa):Oryza sativaOs02t0282900-01
ORTHOMCL926(21 genes,8 taxa):Oryza sativaOs11t0546000-01
ORTHOMCL926(21 genes,8 taxa):Oryza sativaOs11t0546000-02
ORTHOMCL926(21 genes,8 taxa):Populus trichocarpaPOPTR_0003s03960.1
ORTHOMCL926(21 genes,8 taxa):Populus trichocarpaPOPTR_0003s03960.2
ORTHOMCL926(21 genes,8 taxa):Populus trichocarpaPOPTR_0004s24400.1
ORTHOMCL926(21 genes,8 taxa):Sorghum bicolorSb01g042020.1
ORTHOMCL926(21 genes,8 taxa):Sorghum bicolorSb04g011050.1
ORTHOMCL926(21 genes,8 taxa):Carica papayaevm.TU.supercontig_17.22
ORTHOMCL926(21 genes,8 taxa):Carica papayaevm.TU.supercontig_352.3
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:20517845..21615829 (+)A.thalianaChr3:3843142..4833599 (+)103
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:20937524..21444509 (+)B.rapaA06:52274..449870 (-)10
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1364044584614461733Chr3Subgenome_II468
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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