Basic Information
Gene Model:Bol035340
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000035_P2
Sequence:
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Gene Structure
Nucleotide Length:6284 bp
Transcript Length:1344 bp
Protein Length:447 aa
Strand:+
Location:Scaffold000035_P2: 803796 : 810079
Gene CDSs(16): 1-246 | 348-410 | 798-887 | 1003-1062 | 1153-1218 | 1304-1369 | 2407-2499 | 2585-2665 | 3070-3154 | 3257-3300 | 3486-3548 | 4697-4756 | 5300-5353 | 5456-5515 | 5619-5733 | 6187-6284 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00217SUGAR_TRANSPORT_2 164 189 NAIPR005829Sugar transporter, conserved site
HMMPfamPF00083Sugar_tr 201 406 2.8e-31IPR005828General substrate transporter
HMMPfamPF07690MFS_1 72 190 1.4e-16IPR011701Major facilitator superfamily MFS-1
superfamilySSF103473MFS general substrat 43 412 4.6e-39IPR016196Major facilitator superfamily, general substrate transporter
ProfileScanPS50850MFS 68 447 10.633Not foundNot found
HMMPantherPTHR11600SUGAR TRANSPORTER 5 315 1.4e-134Not foundNot found
HMMPantherPTHR11600:SF74SUGAR TRANSPORTER PL 5 315 1.4e-134Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005215 Molecular Function transporter activity
GO:0006810 Biological Process transport
GO:0016020 Cellular Component membrane
GO:0016021 Cellular Component integral to membrane
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
O040360.0ERD6_ARATH Sugar transporter ERD6 OS=Arabidopsis thaliana GN=ERD6 PE=1 SV=3
TrEMBL
Best HitE_value Description
B1GXJ71e-127B1GXJ7_ARATH Hexose transporter-like protein OS=Arabidopsis thaliana GN=At1g08920 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL7134(9 genes,3 taxa):Arabidopsis thalianaAT1G08930.1
ORTHOMCL7134(9 genes,3 taxa):Brassica oleraceaBol006573
ORTHOMCL7134(9 genes,3 taxa):Brassica oleraceaBol022158
ORTHOMCL7134(9 genes,3 taxa):Brassica oleraceaBol035340
ORTHOMCL7134(9 genes,3 taxa):Brassica oleraceaBol041246
ORTHOMCL7134(9 genes,3 taxa):Brassica rapaBra018591
ORTHOMCL7134(9 genes,3 taxa):Brassica rapaBra027959
ORTHOMCL7134(9 genes,3 taxa):Brassica rapaBra030748
ORTHOMCL7134(9 genes,3 taxa):Brassica rapaBra031649
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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