Basic Information
Gene Model:Bol035302
Gene Family:U-box Gene Family
Chromosome:Cun
Scaffold:Scaffold000035_P2
Sequence:
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Gene Structure
Nucleotide Length:2498 bp
Transcript Length:1968 bp
Protein Length:655 aa
Strand:-
Location:Scaffold000035_P2: 510161 : 512658
Gene CDSs(4): 1-1053 | 1249-1662 | 1906-2022 | 2115-2498 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50176ARM_REPEAT 498 540 9.397IPR000225Armadillo
ProfileScanPS50176ARM_REPEAT 457 499 9.782IPR000225Armadillo
ProfileScanPS50176ARM_REPEAT 416 458 14.227IPR000225Armadillo
Gene3DG3DSA:1.25.10.10no description 372 649 3.7e-55IPR011989Armadillo-like helical
Gene3DG3DSA:3.30.40.10no description 278 355 2e-27Not foundNot found
Segsegseg 375 391 NANot foundNot found
HMMSmartSM00185no description 569 609 37IPR000225Armadillo
HMMSmartSM00185no description 528 568 0.33IPR000225Armadillo
HMMSmartSM00185no description 487 527 0.018IPR000225Armadillo
HMMSmartSM00185no description 446 486 88IPR000225Armadillo
HMMSmartSM00504no description 285 348 3.2e-32IPR003613U box domain
HMMSmartSM00185no description 405 445 4.4e-07IPR000225Armadillo
superfamilySSF48371ARM repeat 322 651 6.5e-68IPR016024Armadillo-type fold
superfamilySSF57850RING/U-box 263 348 3.9e-11Not foundNot found
HMMPantherPTHR23315BETA CATENIN-RELATED 376 565 6.8e-16Not foundNot found
HMMPantherPTHR23315:SF7ANKYRIN-REPEAT-ARM D 376 565 6.8e-16Not foundNot found
HMMPfamPF00514Arm 528 568 0.0001IPR000225Armadillo
HMMPfamPF00514Arm 487 527 7.4e-06IPR000225Armadillo
HMMPfamPF00514Arm 446 486 0.0068IPR000225Armadillo
HMMPfamPF04564U-box 283 355 8.5e-27IPR003613U box domain
HMMPfamPF00514Arm 405 445 1.7e-12IPR000225Armadillo
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q681N20.0PUB15_ARATH U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2
TrEMBL
Best HitE_value Description
B9GQ090.0B9GQ09_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_753906 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4189(12 genes,8 taxa):Arabidopsis thalianaAT5G42340.1
ORTHOMCL4189(12 genes,8 taxa):Brassica oleraceaBol035302
ORTHOMCL4189(12 genes,8 taxa):Brassica rapaBra027977
ORTHOMCL4189(12 genes,8 taxa):Vitis viniferaGSVIVT01009896001
ORTHOMCL4189(12 genes,8 taxa):Vitis viniferaGSVIVT01023893001
ORTHOMCL4189(12 genes,8 taxa):Oryza sativaOs08t0481200-01
ORTHOMCL4189(12 genes,8 taxa):Populus trichocarpaPOPTR_0002s01090.1
ORTHOMCL4189(12 genes,8 taxa):Populus trichocarpaPOPTR_0004s21490.1
ORTHOMCL4189(12 genes,8 taxa):Populus trichocarpaPOPTR_0009s16740.1
ORTHOMCL4189(12 genes,8 taxa):Sorghum bicolorSb07g029140.1
ORTHOMCL4189(12 genes,8 taxa):Sorghum bicolorSb10g030800.1
ORTHOMCL4189(12 genes,8 taxa):Carica papayaevm.TU.supercontig_26.189
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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