Basic Information
Gene Model:Bol035154
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000036
Sequence:
 | 
Gene Structure
Nucleotide Length:3156 bp
Transcript Length:1515 bp
Protein Length:504 aa
Strand:-
Location:C03: 56989259 : 56992414
Gene CDSs(14): 1-55 | 139-288 | 367-464 | 916-1056 | 1140-1289 | 1368-1544 | 1624-1804 | 1898-1943 | 2161-2224 | 2314-2336 | 2447-2519 | 2623-2754 | 2842-2928 | 3019-3156 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00687ALDEHYDE_DEHYDR_GLU 266 273 NAIPR016160Aldehyde dehydrogenase, conserved site
HMMPantherPTHR11699ALDEHYDE DEHYDROGENA 64 491 0IPR015590Aldehyde dehydrogenase
HMMPantherPTHR11699:SF26ALDEHYDE DEHYDROGENA 64 491 0Not foundNot found
Segsegseg 458 474 NANot foundNot found
Gene3DG3DSA:3.40.605.10no description 29 332 5.1e-79IPR016162Aldehyde dehydrogenase, N-terminal
superfamilySSF53720ALDH-like 19 491 2.8e-138IPR016161Aldehyde/histidinol dehydrogenase
HMMPfamPF00171Aldedh 30 487 1.9e-158IPR015590Aldehyde dehydrogenase
Gene Ontology
GO TermGO TypeDescription
GO:0008152 Biological Process metabolic process
GO:0016491 Molecular Function oxidoreductase activity
GO:0055114 Biological Process oxidation-reduction process
Swiss-Prot
Best HitE_value Description
Q412470.0AL7A1_BRANA Aldehyde dehydrogenase family 7 member A1 OS=Brassica napus GN=BTG-26 PE=1 SV=3
TrEMBL
Best HitE_value Description
Q5EBY60.0Q5EBY6_EUPCH Aldehyde dehydrogenase family 7 member A1 OS=Euphorbia characias PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5772(10 genes,8 taxa):Arabidopsis thalianaAT1G54100.1
ORTHOMCL5772(10 genes,8 taxa):Brassica oleraceaBol035154
ORTHOMCL5772(10 genes,8 taxa):Brassica rapaBra030906
ORTHOMCL5772(10 genes,8 taxa):Vitis viniferaGSVIVT01015062001
ORTHOMCL5772(10 genes,8 taxa):Oryza sativaOs09t0440300-01
ORTHOMCL5772(10 genes,8 taxa):Oryza sativaOs09t0440300-02
ORTHOMCL5772(10 genes,8 taxa):Populus trichocarpaPOPTR_0001s16730.1
ORTHOMCL5772(10 genes,8 taxa):Populus trichocarpaPOPTR_0003s06570.1
ORTHOMCL5772(10 genes,8 taxa):Sorghum bicolorSb02g025790.1
ORTHOMCL5772(10 genes,8 taxa):Carica papayaevm.TU.supercontig_25.134
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:56836057..57768670 (-)A.thalianaChr3:4314529..4787236 (+)30
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:56868535..57723745 (+)B.rapaA08:17334698..17650939 (-)14
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
CAT1G541002019526420198973Chr1Subgenome_I103
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo