Basic Information
Gene Model:Bol035140
Gene Family:Protein Kinase Gene Families
Chromosome:C03
Scaffold:Scaffold000036
Sequence:
 | 
Gene Structure
Nucleotide Length:3495 bp
Transcript Length:2088 bp
Protein Length:695 aa
Strand:+
Location:C03: 56836057 : 56839551
Gene CDSs(15): 1-100 | 359-491 | 563-634 | 730-795 | 869-940 | 1033-1104 | 1184-1255 | 1336-1401 | 1493-1555 | 1677-1984 | 2063-2346 | 2419-2823 | 2904-3037 | 3112-3268 | 3412-3495 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR23258SERINE-THREONINE PRO 78 591 3.6e-225Not foundNot found
HMMPantherPTHR23258:SF463STRUBBELIG RECEPTOR 78 591 3.6e-225Not foundNot found
Gene3DG3DSA:1.10.510.10no description 493 677 1.8e-32Not foundNot found
Gene3DG3DSA:3.30.200.20no description 367 490 9.4e-19Not foundNot found
Gene3DG3DSA:3.80.10.10no description 27 258 1.6e-42Not foundNot found
ProfileScanPS50011PROTEIN_KINASE_DOM 413 695 33.079IPR000719Protein kinase, catalytic domain
HMMSmartSM00219no description 413 679 4.3e-12IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 413 695 4.2e-14IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00369no description 190 212 57IPR003591Leucine-rich repeat, typical subtype
HMMSmartSM00369no description 166 189 1.2IPR003591Leucine-rich repeat, typical subtype
HMMSmartSM00369no description 142 165 2.4e+02IPR003591Leucine-rich repeat, typical subtype
HMMSmartSM00369no description 96 124 17IPR003591Leucine-rich repeat, typical subtype
Segsegseg 299 311 NANot foundNot found
Segsegseg 312 322 NANot foundNot found
Segsegseg 342 353 NANot foundNot found
Segsegseg 242 265 NANot foundNot found
Segsegseg 286 297 NANot foundNot found
HMMPfamPF00069Pkinase 413 627 4.2e-28IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF00560LRR_1 192 213 0.014IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 168 190 0.037IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 144 166 0.012IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 120 142 1.1IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 98 117 1.4IPR001611Leucine-rich repeat
HMMPfamPF08263LRRNT_2 30 71 6.6e-12IPR013210Leucine-rich repeat, N-terminal
superfamilySSF52058L domain-like 27 233 4.9e-44Not foundNot found
superfamilySSF56112Protein kinase-like 383 669 8.9e-60IPR011009Protein kinase-like domain
PatternScanPS00107PROTEIN_KINASE_ATP 419 442 NAIPR017441Protein kinase, ATP binding site
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005515 Molecular Function protein binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q9C8M90.0SRF6_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q079I00.0Q079I0_ISATI Leucine-rich repeat transmembrane protein kinase OS=Isatis tinctoria PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL105(60 genes,8 taxa):Arabidopsis thalianaAT1G53730.2
ORTHOMCL105(60 genes,8 taxa):Arabidopsis thalianaAT1G78980.1
ORTHOMCL105(60 genes,8 taxa):Arabidopsis thalianaAT3G13062.2
ORTHOMCL105(60 genes,8 taxa):Arabidopsis thalianaAT3G13065.1
ORTHOMCL105(60 genes,8 taxa):Arabidopsis thalianaAT4G22130.1
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol005080
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol010246
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol010626
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol011822
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol015780
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol015781
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol028489
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol035140
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol035507
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol038497
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol039093
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra001486
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra013591
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra021551
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra027347
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra030923
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra034709
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra035080
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra039367
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra039687
ORTHOMCL105(60 genes,8 taxa):Vitis viniferaGSVIVT01004806001
ORTHOMCL105(60 genes,8 taxa):Vitis viniferaGSVIVT01016654001
ORTHOMCL105(60 genes,8 taxa):Vitis viniferaGSVIVT01029461001
ORTHOMCL105(60 genes,8 taxa):Vitis viniferaGSVIVT01029462001
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs02t0190500-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs02t0468400-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs03t0183800-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs03t0183800-02
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs03t0397700-02
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs06t0634500-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs07t0618400-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs07t0618400-02
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs09t0559900-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs10t0389800-01
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0001s16170.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0003s07130.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0007s15160.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0007s15170.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0011s01540.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0011s01540.2
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0011s01540.3
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0014s00330.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0014s00340.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb01g024160.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb01g033190.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb01g045010.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb02g032710.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb02g039370.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb04g006110.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb04g017500.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb10g024830.1
ORTHOMCL105(60 genes,8 taxa):Carica papayaevm.TU.supercontig_10.11
ORTHOMCL105(60 genes,8 taxa):Carica papayaevm.TU.supercontig_10.7
ORTHOMCL105(60 genes,8 taxa):Carica papayaevm.TU.supercontig_152.50
ORTHOMCL105(60 genes,8 taxa):Carica papayaevm.TU.supercontig_229.17
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:55678147..57195390 (+)A.thalianaChr1:19333159..20270107 (+)71
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:55959697..57771693 (+)B.rapaA08:18333897..19451122 (-)94
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
CAT1G537302006170120065713Chr1Subgenome_I103
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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