Basic Information
Gene Model:Bol035095
Gene Family:Transcription Factor Families
Chromosome:C03
Scaffold:Scaffold000036
Sequence:
 | 
Gene Structure
Nucleotide Length:474 bp
Transcript Length:474 bp
Protein Length:157 aa
Strand:+
Location:C03: 56359554 : 56360027
Gene CDSs(1): 1-474 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 54 66 NANot foundNot found
superfamilySSF54171DNA-binding domain 20 81 1.8e-23IPR016177DNA-binding, integrase-type
HMMPfamPF00847AP2 20 71 2.4e-20IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 21 84 1.8e-36IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:3.30.730.10no description 20 81 3.8e-23IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS51032AP2_ERF 21 78 23.999IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
O803402e-46ERF78_ARATH Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q8S2S76e-52Q8S2S7_THEHA Ethylene responsive element binding factor 4-like protein OS=Thellungiella halophila PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL17646(3 genes,3 taxa):Arabidopsis thalianaAT1G53170.1
ORTHOMCL17646(3 genes,3 taxa):Brassica oleraceaBol035095
ORTHOMCL17646(3 genes,3 taxa):Brassica rapaBra030957
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:55836506..56675928 (-)A.thalianaChr3:4964155..5376275 (+)18
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:55959697..57771693 (+)B.rapaA08:18333897..19451122 (-)94
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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