Basic Information
Gene Model:Bol034955
Gene Family:Transcription Factor Families
Chromosome:C02
Scaffold:Scaffold000037
Sequence:
 | 
Gene Structure
Nucleotide Length:1230 bp
Transcript Length:711 bp
Protein Length:236 aa
Strand:-
Location:C02: 14556163 : 14557392
Gene CDSs(3): 1-285 | 356-706 | 1156-1230 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50888HLH 61 115 8.857IPR001092Basic helix-loop-helix dimerisation region bHLH
superfamilySSF47459HLH, helix-loop-heli 50 132 4.4e-09IPR011598Helix-loop-helix DNA-binding
Coilcoilcoiled-coil 111 132 NANot foundNot found
HMMPfamPF00010HLH 61 115 0.0015IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMSmartSM00353no description 66 120 0.0013IPR001092Basic helix-loop-helix dimerisation region bHLH
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9M1K12e-09ORG2_ARATH Transcription factor ORG2 OS=Arabidopsis thaliana GN=ORG2 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9C9887e-59Q9C988_ARATH Putative uncharacterized protein F23N20.19 OS=Arabidopsis thaliana GN=At1g71200 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL26810(2 genes,2 taxa):Brassica oleraceaBol034955
ORTHOMCL26810(2 genes,2 taxa):Brassica rapaBra007968
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:14012380..15529190 (-)A.thalianaChr1:7886542..8215516 (+)18
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:14012380..15529190 (+)B.rapaA07:3862523..4242414 (-)13
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G712002683597326837308Chr1Subgenome_I379
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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