Basic Information
Gene Model:Bol034821
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000038
Sequence:
 | 
Gene Structure
Nucleotide Length:1750 bp
Transcript Length:1137 bp
Protein Length:378 aa
Strand:-
Location:C01: 32265068 : 32266817
Gene CDSs(4): 1-310 | 457-824 | 893-1129 | 1529-1750 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 22 35 NANot foundNot found
HMMPfamPF00481PP2C 78 322 6.3e-30IPR014045Protein phosphatase 2C, N-terminal
superfamilySSF81606Protein serine/threo 46 354 4e-53IPR001932Protein phosphatase 2C-related
PatternScanPS01032PP2C 78 86 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
HMMSmartSM00332no description 44 350 2.7e-69IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832:SF97PROTEIN PHOSPHATASE- 41 357 9.8e-142Not foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 41 357 9.8e-142IPR015655Protein phosphatase 2C
Gene3DG3DSA:3.60.40.10no description 61 356 4.1e-54IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q0V7V20.0P2C42_ARATH Probable protein phosphatase 2C 42 OS=Arabidopsis thaliana GN=At3g17090 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7Q8R61e-166A7Q8R6_VITVI Chromosome chr5 scaffold_64, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00033155001 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL6193(10 genes,8 taxa):Arabidopsis thalianaAT3G17090.1
ORTHOMCL6193(10 genes,8 taxa):Brassica oleraceaBol022958
ORTHOMCL6193(10 genes,8 taxa):Brassica oleraceaBol034821
ORTHOMCL6193(10 genes,8 taxa):Brassica rapaBra021218
ORTHOMCL6193(10 genes,8 taxa):Vitis viniferaGSVIVT01034979001
ORTHOMCL6193(10 genes,8 taxa):Oryza sativaOs03t0832400-01
ORTHOMCL6193(10 genes,8 taxa):Populus trichocarpaPOPTR_0008s10390.1
ORTHOMCL6193(10 genes,8 taxa):Populus trichocarpaPOPTR_0010s15660.1
ORTHOMCL6193(10 genes,8 taxa):Sorghum bicolorSb01g002450.1
ORTHOMCL6193(10 genes,8 taxa):Carica papayaevm.TU.supercontig_9.45
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:30311067..32458398 (+)B.rapaA05:4768730..6340030 (-)80
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1709058268035829621Chr3Subgenome_I317
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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