Basic Information
Gene Model:Bol034804
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000038
Sequence:
 | 
Gene Structure
Nucleotide Length:1741 bp
Transcript Length:1056 bp
Protein Length:351 aa
Strand:-
Location:C01: 32456658 : 32458398
Gene CDSs(5): 1-249 | 450-737 | 1022-1142 | 1250-1473 | 1568-1741 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR13832:SF94PROTEIN PHOSPHATASE 39 350 3e-116Not foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 39 350 3e-116IPR015655Protein phosphatase 2C
superfamilySSF81606Protein serine/threo 41 350 1.8e-56IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:3.60.40.10no description 59 350 9.8e-58IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 169 309 3.1e-42IPR014045Protein phosphatase 2C, N-terminal
HMMSmartSM00332no description 48 346 6.4e-57IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q9LRZ40.0P2C41_ARATH Probable protein phosphatase 2C 41 OS=Arabidopsis thaliana GN=At3g16800 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9HXE71e-131B9HXE7_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_883724 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL7874(9 genes,6 taxa):Arabidopsis thalianaAT3G16800.2
ORTHOMCL7874(9 genes,6 taxa):Brassica oleraceaBol034804
ORTHOMCL7874(9 genes,6 taxa):Brassica oleraceaBol036903
ORTHOMCL7874(9 genes,6 taxa):Brassica rapaBra021202
ORTHOMCL7874(9 genes,6 taxa):Brassica rapaBra022179
ORTHOMCL7874(9 genes,6 taxa):Vitis viniferaGSVIVT01035094001
ORTHOMCL7874(9 genes,6 taxa):Populus trichocarpaPOPTR_0010s00830.1
ORTHOMCL7874(9 genes,6 taxa):Populus trichocarpaPOPTR_0010s00840.1
ORTHOMCL7874(9 genes,6 taxa):Carica papayaevm.TU.supercontig_50.144
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:32265068..33713857 (-)A.thalianaChr3:5212984..5829633 (+)71
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:32344995..32740175 (+)B.rapaA05:4405357..4662533 (-)16
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1680057211055723181Chr3Subgenome_I317
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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