Basic Information
Gene Model:Bol034797
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000038
Sequence:
 | 
Gene Structure
Nucleotide Length:825 bp
Transcript Length:825 bp
Protein Length:274 aa
Strand:-
Location:C01: 32559341 : 32560165
Gene CDSs(1): 1-825 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR22764RING FINGER PROTEIN 89 142 2.9e-17Not foundNot found
superfamilySSF57850RING/U-box 82 136 3.8e-16Not foundNot found
Gene3DG3DSA:3.30.40.10no description 82 136 3.5e-14Not foundNot found
Segsegseg 231 247 NANot foundNot found
Segsegseg 164 173 NANot foundNot found
Segsegseg 181 192 NANot foundNot found
Segsegseg 37 49 NANot foundNot found
Segsegseg 10 26 NANot foundNot found
HMMPfamPF00097zf-C3HC4 89 130 3.3e-10IPR018957Zinc finger, C3HC4 RING-type
HMMSmartSM00184no description 89 130 1.4e-06IPR001841Zinc finger, RING-type
ProfileScanPS50089ZF_RING_2 89 131 12.578IPR001841Zinc finger, RING-type
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
Q8L9T54e-70ATL3F_ARATH RING-H2 finger protein ATL3F OS=Arabidopsis thaliana GN=ATL3F PE=2 SV=2
TrEMBL
Best HitE_value Description
Q4FE425e-69Q4FE42_ARATH At3g16720 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL26797(2 genes,2 taxa):Brassica oleraceaBol034797
ORTHOMCL26797(2 genes,2 taxa):Brassica rapaBra021196
Tandem Duplication
ClusterGene Num.Gene List
Cluster_1823Bol034795 Bol034796 Bol034797 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:32265068..33713857 (-)A.thalianaChr3:5212984..5829633 (+)71
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:32344995..32740175 (+)B.rapaA05:4405357..4662533 (-)16
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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