Basic Information
Gene Model:Bol034795
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000038
Sequence:
 | 
Gene Structure
Nucleotide Length:822 bp
Transcript Length:822 bp
Protein Length:273 aa
Strand:-
Location:C01: 32574663 : 32575484
Gene CDSs(1): 1-822 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR14155RING FINGER PROTEIN 79 147 1.6e-17Not foundNot found
HMMPantherPTHR14155:SF2RING FINGER PROTEIN 79 147 1.6e-17Not foundNot found
superfamilySSF57850RING/U-box 101 163 2.4e-16Not foundNot found
Gene3DG3DSA:3.30.40.10no description 99 153 1.5e-14Not foundNot found
Segsegseg 234 246 NANot foundNot found
HMMPfamPF00097zf-C3HC4 106 147 1.2e-10IPR018957Zinc finger, C3HC4 RING-type
HMMSmartSM00184no description 106 147 8.9e-07IPR001841Zinc finger, RING-type
ProfileScanPS50089ZF_RING_2 106 148 12.563IPR001841Zinc finger, RING-type
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
Q8L9T58e-70ATL3F_ARATH RING-H2 finger protein ATL3F OS=Arabidopsis thaliana GN=ATL3F PE=2 SV=2
TrEMBL
Best HitE_value Description
Q4FE421e-68Q4FE42_ARATH At3g16720 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL26796(2 genes,2 taxa):Brassica oleraceaBol034795
ORTHOMCL26796(2 genes,2 taxa):Brassica rapaBra021195
Tandem Duplication
ClusterGene Num.Gene List
Cluster_1823Bol034795 Bol034796 Bol034797 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:32265068..33713857 (-)A.thalianaChr3:5212984..5829633 (+)71
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:32344995..32740175 (+)B.rapaA05:4405357..4662533 (-)16
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1672056927385694127Chr3Subgenome_I317
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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