Basic Information
Gene Model:Bol034696
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000038
Sequence:
 | 
Gene Structure
Nucleotide Length:2970 bp
Transcript Length:1680 bp
Protein Length:559 aa
Strand:+
Location:C01: 33783986 : 33786955
Gene CDSs(13): 1-120 | 211-265 | 347-479 | 571-686 | 757-851 | 939-1077 | 1278-1339 | 1437-1580 | 1674-1832 | 1910-2082 | 2191-2355 | 2497-2689 | 2845-2970 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.60.40.10no description 299 556 2.9e-47IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:2.60.200.20no description 158 295 9e-64IPR000253Forkhead-associated
HMMSmartSM00240no description 190 241 1.7e-08IPR000253Forkhead-associated
HMMSmartSM00332no description 280 553 1.2e-61IPR001932Protein phosphatase 2C-related
Segsegseg 9 24 NANot foundNot found
superfamilySSF81606Protein serine/threo 265 556 3.2e-50IPR001932Protein phosphatase 2C-related
superfamilySSF49879SMAD/FHA domain 160 280 1.5e-24IPR008984SMAD/FHA domain
ProfileScanPS50006FHA_DOMAIN 191 241 11.787IPR000253Forkhead-associated
HMMPantherPTHR13832:SF10KINASE ASSOCIATED PR 271 556 3.2e-185Not foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 271 556 3.2e-185IPR015655Protein phosphatase 2C
PatternScanPS01032PP2C 323 331 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
HMMPfamPF00481PP2C 291 548 1.6e-72IPR014045Protein phosphatase 2C, N-terminal
HMMPfamPF00498FHA 191 266 7.6e-14IPR000253Forkhead-associated
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
P460140.0P2C70_ARATH Protein phosphatase 2C 70 OS=Arabidopsis thaliana GN=KAPP PE=1 SV=2
TrEMBL
Best HitE_value Description
Q84WW90.0Q84WW9_BRAOL Kinase-associated protein phosophatase OS=Brassica oleracea GN=kapp PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4141(12 genes,8 taxa):Arabidopsis thalianaAT5G19280.2
ORTHOMCL4141(12 genes,8 taxa):Brassica oleraceaBol007125
ORTHOMCL4141(12 genes,8 taxa):Brassica oleraceaBol034696
ORTHOMCL4141(12 genes,8 taxa):Brassica rapaBra002223
ORTHOMCL4141(12 genes,8 taxa):Brassica rapaBra023718
ORTHOMCL4141(12 genes,8 taxa):Vitis viniferaGSVIVT01017919001
ORTHOMCL4141(12 genes,8 taxa):Oryza sativaOs03t0809700-01
ORTHOMCL4141(12 genes,8 taxa):Oryza sativaOs07t0211400-01
ORTHOMCL4141(12 genes,8 taxa):Populus trichocarpaPOPTR_0008s14900.1
ORTHOMCL4141(12 genes,8 taxa):Populus trichocarpaPOPTR_0010s10180.1
ORTHOMCL4141(12 genes,8 taxa):Sorghum bicolorSb02g006370.1
ORTHOMCL4141(12 genes,8 taxa):Carica papayaevm.TU.supercontig_147.22
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:33443792..33811462 (+)A.thalianaChr5:6344789..6516205 (+)15
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:33443792..33811462 (+)B.rapaA10:6656108..6825021 (+)15
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1928064883196493439Chr5Subgenome_III(LF)14
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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