Basic Information
Gene Model:Bol034680
Gene Family:Transcription Factor Families
Chromosome:C01
Scaffold:Scaffold000038
Sequence:
 | 
Gene Structure
Nucleotide Length:1135 bp
Transcript Length:777 bp
Protein Length:258 aa
Strand:+
Location:C01: 33916698 : 33917832
Gene CDSs(5): 1-60 | 150-302 | 401-535 | 630-794 | 872-1135 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF47459HLH, helix-loop-heli 131 216 2.7e-15IPR011598Helix-loop-helix DNA-binding
ProfileScanPS50888HLH 127 184 10.997IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMPantherPTHR12565:SF7CENTROMERE-BINDING P 136 183 2.9e-06Not foundNot found
HMMPantherPTHR12565STEROL REGULATORY EL 136 183 2.9e-06Not foundNot found
HMMSmartSM00353no description 139 189 1.7e-08IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMPfamPF00010HLH 134 184 4.4e-08IPR001092Basic helix-loop-helix dimerisation region bHLH
Gene3DG3DSA:4.10.280.10no description 129 210 3.2e-08IPR011598Helix-loop-helix DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q8GY615e-79BH063_ARATH Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7P9004e-42A7P900_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00036369001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL26781(2 genes,2 taxa):Brassica oleraceaBol034680
ORTHOMCL26781(2 genes,2 taxa):Brassica rapaBra034636
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:33839704..34691281 (+)A.thalianaChr4:16456597..16793685 (+)42
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:33839704..34694012 (+)B.rapaA08:9002105..9425418 (+)44
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G345301649839116500174Chr4Subgenome_II48
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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