Basic Information
Gene Model:Bol034676
Gene Family:Transcription Factor Families
Chromosome:C01
Scaffold:Scaffold000038
Sequence:
 | 
Gene Structure
Nucleotide Length:429 bp
Transcript Length:429 bp
Protein Length:142 aa
Strand:+
Location:C01: 33940916 : 33941344
Gene CDSs(1): 1-429 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50217BZIP 14 77 10.048IPR004827Basic-leucine zipper (bZIP) transcription factor
PatternScanPS00036BZIP_BASIC 19 34 NAIPR004827Basic-leucine zipper (bZIP) transcription factor
Coilcoilcoiled-coil 32 60 NANot foundNot found
Coilcoilcoiled-coil 74 102 NANot foundNot found
HMMSmartSM00338no description 12 76 1.4e-16IPR004827Basic-leucine zipper (bZIP) transcription factor
HMMPfamPF07716bZIP_2 12 66 3.8e-06IPR011700Basic leucine zipper
Segsegseg 120 131 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0005634 Cellular Component nucleus
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
P240685e-15OCS1_MAIZE Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2
TrEMBL
Best HitE_value Description
O656831e-55O65683_ARATH BZIP transcription factor ATB2 OS=Arabidopsis thaliana GN=T4L20.170 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3258(13 genes,8 taxa):Arabidopsis thalianaAT4G34590.1
ORTHOMCL3258(13 genes,8 taxa):Brassica oleraceaBol013680
ORTHOMCL3258(13 genes,8 taxa):Brassica oleraceaBol024237
ORTHOMCL3258(13 genes,8 taxa):Brassica oleraceaBol034676
ORTHOMCL3258(13 genes,8 taxa):Brassica rapaBra011545
ORTHOMCL3258(13 genes,8 taxa):Brassica rapaBra017664
ORTHOMCL3258(13 genes,8 taxa):Brassica rapaBra034639
ORTHOMCL3258(13 genes,8 taxa):Vitis viniferaGSVIVT01023817001
ORTHOMCL3258(13 genes,8 taxa):Oryza sativaOs02t0132500-01
ORTHOMCL3258(13 genes,8 taxa):Populus trichocarpaPOPTR_0004s16560.1
ORTHOMCL3258(13 genes,8 taxa):Populus trichocarpaPOPTR_0009s12250.1
ORTHOMCL3258(13 genes,8 taxa):Sorghum bicolorSb04g002700.1
ORTHOMCL3258(13 genes,8 taxa):Carica papayaevm.TU.supercontig_538.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:33839704..34691281 (+)A.thalianaChr4:16456597..16793685 (+)42
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:33839704..34694012 (+)B.rapaA08:9002105..9425418 (+)44
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G345901652186116523230Chr4Subgenome_II48
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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