Basic Information
Gene Model:Bol034614
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000039
Sequence:
 | 
Gene Structure
Nucleotide Length:1311 bp
Transcript Length:762 bp
Protein Length:253 aa
Strand:+
Location:C03: 4408855 : 4410165
Gene CDSs(5): 1-174 | 466-645 | 721-876 | 974-1051 | 1138-1311 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HAMAPMF_00580CH10_MF_00580 159 253 21.073IPR001476Chaperonin Cpn10, subgroup
HAMAPMF_00580CH10_MF_00580 61 153 22.973IPR001476Chaperonin Cpn10, subgroup
HMMSmartSM00883no description 61 152 1.7e-40IPR001476Chaperonin Cpn10, subgroup
HMMSmartSM00883no description 159 252 2.1e-40IPR001476Chaperonin Cpn10, subgroup
HMMPfamPF00166Cpn10 159 252 2e-39IPR020818Chaperonin Cpn10
HMMPfamPF00166Cpn10 61 152 2.1e-42IPR020818Chaperonin Cpn10
superfamilySSF50129GroES-like 158 253 1.1e-29IPR011032GroES-like
superfamilySSF50129GroES-like 58 154 5e-32IPR011032GroES-like
HMMPantherPTHR10772GROES CHAPERONIN 150 253 1.2e-40IPR001476Chaperonin Cpn10, subgroup
Gene3DG3DSA:2.30.33.40no description 156 252 1.7e-23IPR020818Chaperonin Cpn10
Gene3DG3DSA:2.30.33.40no description 58 154 6.9e-27IPR020818Chaperonin Cpn10
HMMPIRPIRSF038157Chaperonin 21, chlor 1 253 4.1e-165IPR017416Chaperonin 21, chloroplast
PatternScanPS00681CHAPERONINS_CPN10 62 86 NAIPR018369Chaperonin Cpn10, conserved site
PatternScanPS00681CHAPERONINS_CPN10 160 184 NAIPR018369Chaperonin Cpn10, conserved site
Segsegseg 45 56 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005524 Molecular Function ATP binding
GO:0005737 Cellular Component cytoplasm
GO:0006457 Biological Process protein folding
Swiss-Prot
Best HitE_value Description
O652821e-132CH10C_ARATH 20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2
TrEMBL
Best HitE_value Description
B9RR631e-113B9RR63_RICCO Groes chaperonin, putative OS=Ricinus communis GN=RCOM_0710470 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3307(13 genes,8 taxa):Arabidopsis thalianaAT5G20720.1
ORTHOMCL3307(13 genes,8 taxa):Brassica oleraceaBol034614
ORTHOMCL3307(13 genes,8 taxa):Brassica oleraceaBol035796
ORTHOMCL3307(13 genes,8 taxa):Brassica rapaBra002326
ORTHOMCL3307(13 genes,8 taxa):Brassica rapaBra006572
ORTHOMCL3307(13 genes,8 taxa):Vitis viniferaGSVIVT01008295001
ORTHOMCL3307(13 genes,8 taxa):Vitis viniferaGSVIVT01015036001
ORTHOMCL3307(13 genes,8 taxa):Oryza sativaOs06t0196900-02
ORTHOMCL3307(13 genes,8 taxa):Oryza sativaOs06t0196900-03
ORTHOMCL3307(13 genes,8 taxa):Populus trichocarpaPOPTR_0006s14080.1
ORTHOMCL3307(13 genes,8 taxa):Sorghum bicolorSb04g035040.1
ORTHOMCL3307(13 genes,8 taxa):Sorghum bicolorSb10g006450.1
ORTHOMCL3307(13 genes,8 taxa):Carica papayaevm.TU.supercontig_261.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:1982512..4896037 (+)A.thalianaChr5:4002775..7686779 (+)386
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:3384356..7484156 (+)B.rapaA10:5981599..12607476 (+)333
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G2072070146747016481Chr5Subgenome_II626
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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