Basic Information
Gene Model:Bol034561
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000039
Sequence:
 | 
Gene Structure
Nucleotide Length:4286 bp
Transcript Length:3150 bp
Protein Length:1049 aa
Strand:-
Location:C03: 4098157 : 4102442
Gene CDSs(10): 1-86 | 198-258 | 352-855 | 948-2016 | 2121-2384 | 2494-2747 | 2801-2917 | 3225-3377 | 3506-3634 | 3774-4286 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 360 371 NANot foundNot found
Segsegseg 1031 1041 NANot foundNot found
superfamilySSF52743Subtilisin-like 107 488 1e-64IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPantherPTHR10795:SF30SITE-1 PROTEASE (STE 12 571 1.6e-294Not foundNot found
HMMPantherPTHR10795SUBTILISIN/KEXIN-REL 12 571 1.6e-294IPR015500Peptidase S8, subtilisin-related
HMMPfamPF00082Peptidase_S8 174 471 4e-23IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Gene3DG3DSA:3.40.50.200no description 171 482 1.6e-60IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
PatternScanPS00138SUBTILASE_SER 418 428 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
PatternScanPS00137SUBTILASE_HIS 231 241 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Gene Ontology
GO TermGO TypeDescription
GO:0004252 Molecular Function serine-type endopeptidase activity
GO:0006508 Biological Process proteolysis
Swiss-Prot
Best HitE_value Description
Q147030.0MBTP1_HUMAN Membrane-bound transcription factor site-1 protease OS=Homo sapiens GN=MBTPS1 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q0WUG60.0Q0WUG6_ARATH Subtilisin like protein OS=Arabidopsis thaliana GN=At5g19660 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL10539(8 genes,8 taxa):Arabidopsis thalianaAT5G19660.1
ORTHOMCL10539(8 genes,8 taxa):Brassica oleraceaBol034561
ORTHOMCL10539(8 genes,8 taxa):Brassica rapaBra006513
ORTHOMCL10539(8 genes,8 taxa):Vitis viniferaGSVIVT01015382001
ORTHOMCL10539(8 genes,8 taxa):Oryza sativaOs06t0163500-01
ORTHOMCL10539(8 genes,8 taxa):Populus trichocarpaPOPTR_0018s08810.1
ORTHOMCL10539(8 genes,8 taxa):Sorghum bicolorSb10g004450.1
ORTHOMCL10539(8 genes,8 taxa):Carica papayaevm.TU.supercontig_23.82
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:1982512..4896037 (+)A.thalianaChr5:4002775..7686779 (+)386
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:3384356..7484156 (+)B.rapaA10:5981599..12607476 (+)333
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1966066420046646530Chr5Subgenome_II626
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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