Basic Information
Gene Model:Bol034552
Gene Family:Sulfurtransferasese/Rhodanese Gene Family
Chromosome:C03
Scaffold:Scaffold000039
Sequence:
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Gene Structure
Nucleotide Length:2346 bp
Transcript Length:897 bp
Protein Length:298 aa
Strand:-
Location:C03: 4051890 : 4054235
Gene CDSs(8): 1-81 | 153-203 | 594-702 | 905-1009 | 1090-1190 | 1470-1561 | 1919-2032 | 2103-2346 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00581Rhodanese 195 290 1.4e-12IPR001763Rhodanese-like
HMMPfamPF00639Rotamase 99 182 3.4e-21IPR000297Peptidyl-prolyl cis-trans isomerase, PpiC-type
Gene3DG3DSA:3.40.250.10no description 166 293 1.5e-22IPR001763Rhodanese-like
HMMPantherPTHR10657ROTAMASE 94 252 4.7e-18Not foundNot found
Segsegseg 153 162 NANot foundNot found
Segsegseg 47 61 NANot foundNot found
Segsegseg 83 92 NANot foundNot found
ProfileScanPS50198PPIC_PPIASE_2 92 182 19.686IPR000297Peptidyl-prolyl cis-trans isomerase, PpiC-type
ProfileScanPS50206RHODANESE_3 204 296 17.087IPR001763Rhodanese-like
superfamilySSF54534FKBP-like 85 182 9e-24Not foundNot found
superfamilySSF52821Rhodanese/Cell cycle 166 296 2.2e-25IPR001763Rhodanese-like
HMMSmartSM00450no description 190 293 9.2e-20IPR001763Rhodanese-like
Gene Ontology
GO TermGO TypeDescription
GO:0016853 Molecular Function isomerase activity
Swiss-Prot
Best HitE_value Description
Q3JAF16e-13SURA_NITOC Chaperone surA OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=surA PE=3 SV=1
TrEMBL
Best HitE_value Description
Q93WI01e-125Q93WI0_ARATH Putative peptidyl-prolyl cis-trans isomerase OS=Arabidopsis thaliana GN=At5g19370 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL8461(9 genes,8 taxa):Arabidopsis thalianaAT5G19370.1
ORTHOMCL8461(9 genes,8 taxa):Brassica oleraceaBol007117
ORTHOMCL8461(9 genes,8 taxa):Brassica oleraceaBol034552
ORTHOMCL8461(9 genes,8 taxa):Brassica rapaBra006503
ORTHOMCL8461(9 genes,8 taxa):Vitis viniferaGSVIVT01037292001
ORTHOMCL8461(9 genes,8 taxa):Oryza sativaOs07t0687500-01
ORTHOMCL8461(9 genes,8 taxa):Populus trichocarpaPOPTR_0009s07340.1
ORTHOMCL8461(9 genes,8 taxa):Sorghum bicolorSb02g043490.1
ORTHOMCL8461(9 genes,8 taxa):Carica papayaevm.TU.supercontig_157.56
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:1982512..4896037 (+)A.thalianaChr5:4002775..7686779 (+)386
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:3384356..7484156 (+)B.rapaA10:5981599..12607476 (+)333
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1937065241206526706Chr5Subgenome_II626
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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