Basic Information
Gene Model:Bol034491
Gene Family:U-box Gene Family
Chromosome:C03
Scaffold:Scaffold000039
Sequence:
 | 
Gene Structure
Nucleotide Length:1975 bp
Transcript Length:1419 bp
Protein Length:472 aa
Strand:-
Location:C03: 3671228 : 3673202
Gene CDSs(2): 1-1095 | 1652-1975 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR23258:SF447RECEPTOR-LIKE PROTEI 50 423 3.9e-07Not foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 50 423 3.9e-07Not foundNot found
HMMPfamPF04564U-box 84 157 4.8e-18IPR003613U box domain
HMMSmartSM00504no description 88 150 7.2e-18IPR003613U box domain
Gene3DG3DSA:1.25.10.10no description 170 401 7.8e-12IPR011989Armadillo-like helical
Gene3DG3DSA:3.30.40.10no description 81 157 1.5e-19Not foundNot found
superfamilySSF57850RING/U-box 68 153 3.3e-10Not foundNot found
superfamilySSF48371ARM repeat 124 465 5.4e-30IPR016024Armadillo-type fold
Segsegseg 2 11 NANot foundNot found
Segsegseg 65 81 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q3E9F71e-141PUB46_ARATH Putative U-box domain-containing protein 46 OS=Arabidopsis thaliana GN=PUB46 PE=3 SV=1
TrEMBL
Best HitE_value Description
A7PZ619e-76A7PZ61_VITVI Chromosome chr4 scaffold_39, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00026755001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT1G31540.2
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT1G56510.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT1G56520.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT1G56540.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT1G63730.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT1G63740.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT1G63750.3
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT1G63860.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT1G63870.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT1G63880.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT1G64070.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT1G69550.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT2G14080.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT2G16870.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT3G04220.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT3G25510.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT3G44400.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT3G44480.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT3G44630.3
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT3G44670.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT4G08450.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT4G11170.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT4G14370.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT4G16860.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT4G16890.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT4G16900.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT4G16920.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT4G16940.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT4G16950.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT4G16960.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT5G11250.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT5G17680.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT5G17970.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT5G18350.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT5G18360.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT5G18370.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT5G22690.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT5G38340.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT5G38350.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT5G38850.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT5G40060.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT5G40910.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT5G41540.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT5G41550.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT5G41740.2
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT5G41750.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT5G44510.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT5G46260.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT5G46270.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT5G46450.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT5G46470.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT5G46490.2
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT5G46510.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT5G46520.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT5G49140.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT5G51630.1
ORTHOMCL9(182 genes,4 taxa):Arabidopsis thalianaAT5G58120.1
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol001023
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol003919
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol004405
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol004406
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol010467
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol012130
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol014145
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol014493
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol014585
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol014586
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol016084
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol020085
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol020123
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol021054
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol021061
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol021070
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol021357
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol022619
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol022631
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol022779
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol022784
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol023093
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol024282
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol030352
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol032126
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol034093
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol034489
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol034491
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol036379
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol037158
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol042121
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol044005
ORTHOMCL9(182 genes,4 taxa):Brassica oleraceaBol044692
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra001160
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra001161
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra001162
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra001175
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra002117
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra002153
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra002154
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra003997
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra004192
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra006094
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra006095
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra006146
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra006451
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra006452
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra006556
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra009141
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra010496
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra010588
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra010589
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra010590
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra010663
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra012688
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra012689
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra013959
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra017542
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra017544
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra017807
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra019273
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra019409
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra019410
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra019413
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra020861
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra021754
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra022034
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra022036
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra022037
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra022039
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra022071
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra022850
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra023631
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra023632
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra023647
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra023670
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra023671
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra023710
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra025467
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra025493
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra025639
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra027122
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra027510
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra027598
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra027660
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra027772
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra027775
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra027778
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra027779
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra027780
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra027790
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra027791
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra028499
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra028500
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra029443
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra030158
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra032045
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra034079
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra034352
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra036019
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra036413
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra036417
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra036799
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra038872
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra039560
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra039798
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra040208
ORTHOMCL9(182 genes,4 taxa):Brassica rapaBra040210
ORTHOMCL9(182 genes,4 taxa):Populus trichocarpaPOPTR_0004s08710.1
ORTHOMCL9(182 genes,4 taxa):Populus trichocarpaPOPTR_0005s03020.1
ORTHOMCL9(182 genes,4 taxa):Populus trichocarpaPOPTR_0005s03030.1
ORTHOMCL9(182 genes,4 taxa):Populus trichocarpaPOPTR_0005s03070.1
ORTHOMCL9(182 genes,4 taxa):Populus trichocarpaPOPTR_0005s03120.1
ORTHOMCL9(182 genes,4 taxa):Populus trichocarpaPOPTR_0005s03160.1
ORTHOMCL9(182 genes,4 taxa):Populus trichocarpaPOPTR_0005s03190.1
ORTHOMCL9(182 genes,4 taxa):Populus trichocarpaPOPTR_0005s03200.1
ORTHOMCL9(182 genes,4 taxa):Populus trichocarpaPOPTR_0005s03230.1
ORTHOMCL9(182 genes,4 taxa):Populus trichocarpaPOPTR_0005s03330.1
ORTHOMCL9(182 genes,4 taxa):Populus trichocarpaPOPTR_0005s03350.1
ORTHOMCL9(182 genes,4 taxa):Populus trichocarpaPOPTR_0005s03360.1
ORTHOMCL9(182 genes,4 taxa):Populus trichocarpaPOPTR_0005s03400.1
ORTHOMCL9(182 genes,4 taxa):Populus trichocarpaPOPTR_0005s03440.1
ORTHOMCL9(182 genes,4 taxa):Populus trichocarpaPOPTR_0005s03460.1
ORTHOMCL9(182 genes,4 taxa):Populus trichocarpaPOPTR_0005s03490.1
ORTHOMCL9(182 genes,4 taxa):Populus trichocarpaPOPTR_2435s00200.1
Tandem Duplication
ClusterGene Num.Gene List
Cluster_2713Bol034488 Bol034489 Bol034491 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:1982512..4896037 (+)A.thalianaChr5:4002775..7686779 (+)386
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:3384356..7484156 (+)B.rapaA10:5981599..12607476 (+)333
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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