Basic Information
Gene Model:Bol034271
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000039
Sequence:
 | 
Gene Structure
Nucleotide Length:2703 bp
Transcript Length:1743 bp
Protein Length:580 aa
Strand:+
Location:C03: 2449059 : 2451761
Gene CDSs(3): 1-339 | 947-1881 | 2235-2703 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR21576UNCHARACTERIZED NODU 1 579 5.2e-205Not foundNot found
superfamilySSF103473MFS general substrat 1 569 5.7e-27IPR016196Major facilitator superfamily, general substrate transporter
Segsegseg 458 469 NANot foundNot found
Segsegseg 181 190 NANot foundNot found
Segsegseg 243 263 NANot foundNot found
Segsegseg 325 347 NANot foundNot found
Segsegseg 371 380 NANot foundNot found
HMMPfamPF06813Nodulin-like 16 263 2.3e-141IPR010658Nodulin-like
ProfileScanPS51257PROKAR_LIPOPROTEIN 1 29 5.000Not foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q6CGU84e-07MCH1_YARLI Probable transporter MCH1 OS=Yarrowia lipolytica GN=MCH1 PE=3 SV=1
TrEMBL
Best HitE_value Description
Q9FMT80.0Q9FMT8_ARATH Nodulin-like protein OS=Arabidopsis thaliana GN=At5g14120 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1531(17 genes,8 taxa):Arabidopsis thalianaAT3G01930.2
ORTHOMCL1531(17 genes,8 taxa):Arabidopsis thalianaAT5G14120.1
ORTHOMCL1531(17 genes,8 taxa):Brassica oleraceaBol034271
ORTHOMCL1531(17 genes,8 taxa):Brassica oleraceaBol043380
ORTHOMCL1531(17 genes,8 taxa):Brassica rapaBra006239
ORTHOMCL1531(17 genes,8 taxa):Brassica rapaBra008776
ORTHOMCL1531(17 genes,8 taxa):Vitis viniferaGSVIVT01008567001
ORTHOMCL1531(17 genes,8 taxa):Vitis viniferaGSVIVT01033076001
ORTHOMCL1531(17 genes,8 taxa):Vitis viniferaGSVIVT01033079001
ORTHOMCL1531(17 genes,8 taxa):Oryza sativaOs08t0532400-01
ORTHOMCL1531(17 genes,8 taxa):Populus trichocarpaPOPTR_0001s33670.1
ORTHOMCL1531(17 genes,8 taxa):Populus trichocarpaPOPTR_0012s10080.1
ORTHOMCL1531(17 genes,8 taxa):Populus trichocarpaPOPTR_0017s09650.1
ORTHOMCL1531(17 genes,8 taxa):Sorghum bicolorSb06g013890.1
ORTHOMCL1531(17 genes,8 taxa):Sorghum bicolorSb06g013900.1
ORTHOMCL1531(17 genes,8 taxa):Sorghum bicolorSb07g026140.1
ORTHOMCL1531(17 genes,8 taxa):Carica papayaevm.TU.supercontig_171.7
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:1982512..4896037 (+)A.thalianaChr5:4002775..7686779 (+)386
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:1982512..3407547 (+)B.rapaA10:10299..1528392 (-)131
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1412045559494558710Chr5Subgenome_II626
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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