Basic Information
Gene Model:Bol034163
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000040
Sequence:
 | 
Gene Structure
Nucleotide Length:532 bp
Transcript Length:426 bp
Protein Length:141 aa
Strand:+
Location:Scaffold000040: 1927199 : 1927730
Gene CDSs(2): 1-249 | 356-532 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00448no description 21 135 2.6e-22IPR001789Signal transduction response regulator, receiver region
ProfileScanPS50110RESPONSE_REGULATORY 22 139 27.642IPR001789Signal transduction response regulator, receiver region
superfamilySSF52172CheY-like 18 140 2.8e-27IPR011006CheY-like
HMMPantherPTHR23283:SF41TWO COMPONENT SENSOR 12 139 2e-22Not foundNot found
HMMPantherPTHR23283SENSOR HISTIDINE KIN 12 139 2e-22Not foundNot found
Gene3DG3DSA:3.40.50.2300no description 21 140 1.6e-23Not foundNot found
HMMPfamPF00072Response_reg 23 136 1.2e-22IPR001789Signal transduction response regulator, receiver region
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9M8Y42e-62ARR22_ARATH Two-component response regulator ARR22 OS=Arabidopsis thaliana GN=ARR22 PE=2 SV=1
TrEMBL
Best HitE_value Description
O824455e-56O82445_BRANA Response regulator protein OS=Brassica napus PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4797(11 genes,8 taxa):Arabidopsis thalianaAT3G04280.1
ORTHOMCL4797(11 genes,8 taxa):Brassica oleraceaBol001327
ORTHOMCL4797(11 genes,8 taxa):Brassica oleraceaBol034163
ORTHOMCL4797(11 genes,8 taxa):Brassica rapaBra001099
ORTHOMCL4797(11 genes,8 taxa):Brassica rapaBra040204
ORTHOMCL4797(11 genes,8 taxa):Vitis viniferaGSVIVT01026349001
ORTHOMCL4797(11 genes,8 taxa):Oryza sativaOs03t0742300-01
ORTHOMCL4797(11 genes,8 taxa):Populus trichocarpaPOPTR_0019s04160.1
ORTHOMCL4797(11 genes,8 taxa):Populus trichocarpaPOPTR_0019s04170.1
ORTHOMCL4797(11 genes,8 taxa):Sorghum bicolorSb01g008510.1
ORTHOMCL4797(11 genes,8 taxa):Carica papayaevm.TU.supercontig_51.33
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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