Basic Information
Gene Model:Bol034086
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000040
Sequence:
 | 
Gene Structure
Nucleotide Length:271 bp
Transcript Length:165 bp
Protein Length:54 aa
Strand:+
Location:Scaffold000040: 1249154 : 1249424
Gene CDSs(2): 1-81 | 188-271 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS01309UPF0057 10 25 NAIPR000612Uncharacterised protein family UPF0057
HMMPantherPTHR21659HYDROPHOBIC PROTEIN 1 54 3.9e-24IPR000612Uncharacterised protein family UPF0057
Segsegseg 9 18 NANot foundNot found
HMMPfamPF01679UPF0057 4 54 4.3e-23IPR000612Uncharacterised protein family UPF0057
Gene Ontology
GO TermGO TypeDescription
GO:0016021 Cellular Component integral to membrane
Swiss-Prot
Best HitE_value Description
Q9ZNQ72e-20RCI2A_ARATH Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1
TrEMBL
Best HitE_value Description
Q2HRS63e-17Q2HRS6_MEDTR Putative uncharacterized protein OS=Medicago truncatula GN=MtrDRAFT_AC157894g19v2 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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