Basic Information
Gene Model:Bol034085
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000040
Sequence:
 | 
Gene Structure
Nucleotide Length:271 bp
Transcript Length:168 bp
Protein Length:55 aa
Strand:+
Location:Scaffold000040: 1235263 : 1235533
Gene CDSs(2): 1-81 | 185-271 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF01679UPF0057 4 54 6.6e-24IPR000612Uncharacterised protein family UPF0057
PatternScanPS01309UPF0057 10 25 NAIPR000612Uncharacterised protein family UPF0057
HMMPantherPTHR21659HYDROPHOBIC PROTEIN 1 54 5.3e-23IPR000612Uncharacterised protein family UPF0057
Gene Ontology
GO TermGO TypeDescription
GO:0016021 Cellular Component integral to membrane
Swiss-Prot
Best HitE_value Description
Q9ZNQ71e-17RCI2A_ARATH Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1
TrEMBL
Best HitE_value Description
B9RFR73e-17B9RFR7_RICCO Hydrophobic protein LTI6A, putative OS=Ricinus communis GN=RCOM_1436830 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3064(13 genes,6 taxa):Arabidopsis thalianaAT3G05880.1
ORTHOMCL3064(13 genes,6 taxa):Arabidopsis thalianaAT3G05890.1
ORTHOMCL3064(13 genes,6 taxa):Brassica oleraceaBol034085
ORTHOMCL3064(13 genes,6 taxa):Brassica rapaBra001171
ORTHOMCL3064(13 genes,6 taxa):Oryza sativaOs05t0138300-03
ORTHOMCL3064(13 genes,6 taxa):Oryza sativaOs07t0635900-01
ORTHOMCL3064(13 genes,6 taxa):Populus trichocarpaPOPTR_0005s00390.1
ORTHOMCL3064(13 genes,6 taxa):Populus trichocarpaPOPTR_0013s00340.2
ORTHOMCL3064(13 genes,6 taxa):Populus trichocarpaPOPTR_0013s00340.3
ORTHOMCL3064(13 genes,6 taxa):Populus trichocarpaPOPTR_0013s00340.4
ORTHOMCL3064(13 genes,6 taxa):Populus trichocarpaPOPTR_0013s00340.5
ORTHOMCL3064(13 genes,6 taxa):Sorghum bicolorSb09g003050.1
ORTHOMCL3064(13 genes,6 taxa):Sorghum bicolorSb09g003060.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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