Basic Information
Gene Model:Bol034062
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000040
Sequence:
 | 
Gene Structure
Nucleotide Length:1133 bp
Transcript Length:1065 bp
Protein Length:354 aa
Strand:-
Location:Scaffold000040: 1091471 : 1092603
Gene CDSs(2): 1-138 | 207-1133 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS01032PP2C 91 99 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
HMMSmartSM00332no description 55 346 1.2e-49IPR001932Protein phosphatase 2C-related
superfamilySSF81606Protein serine/threo 34 353 5.6e-53IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832PROTEIN PHOSPHATASE 33 350 8.1e-97IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF94PROTEIN PHOSPHATASE 33 350 8.1e-97Not foundNot found
Gene3DG3DSA:3.60.40.10no description 70 350 9.5e-50IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 84 310 3.4e-35IPR014045Protein phosphatase 2C, N-terminal
Segsegseg 14 22 NANot foundNot found
Segsegseg 321 325 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q7XJ531e-173P2C35_ARATH Probable protein phosphatase 2C 35 OS=Arabidopsis thaliana GN=At3g06270 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9RSV01e-148B9RSV0_RICCO Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0678830 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9744(8 genes,5 taxa):Arabidopsis thalianaAT3G06270.1
ORTHOMCL9744(8 genes,5 taxa):Brassica oleraceaBol002462
ORTHOMCL9744(8 genes,5 taxa):Brassica oleraceaBol034062
ORTHOMCL9744(8 genes,5 taxa):Brassica rapaBra001189
ORTHOMCL9744(8 genes,5 taxa):Brassica rapaBra040230
ORTHOMCL9744(8 genes,5 taxa):Populus trichocarpaPOPTR_0008s20320.1
ORTHOMCL9744(8 genes,5 taxa):Populus trichocarpaPOPTR_0010s02910.1
ORTHOMCL9744(8 genes,5 taxa):Carica papayaevm.TU.supercontig_16.69
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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