Basic Information
Gene Model:Bol034005
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000040
Sequence:
 | 
Gene Structure
Nucleotide Length:12455 bp
Transcript Length:5733 bp
Protein Length:1910 aa
Strand:+
Location:Scaffold000040: 752061 : 764515
Gene CDSs(51): 1-205 | 285-382 | 551-705 | 788-884 | 1001-1111 | 1183-1308 | 1703-1792 | 1995-2092 | 2167-2284 | 2402-2548 | 2618-2694 | 2770-2848 | 3105-3227 | 3332-3449 | 3539-3662 | 3749-3938 | 4037-4089 | 4366-4426 | 4644-4725 | 5013-5062 | 5237-5323 | 5406-5491 | 5593-5614 | 5724-5821 | 6305-6386 | 6507-6664 | 6755-6875 | 7003-7100 | 7184-7274 | 7358-7506 | 7607-7716 | 7826-7957 | 8049-8117 | 8196-8376 | 8452-8566 | 8693-8812 | 9053-9174 | 9258-9341 | 9413-9525 | 9613-9665 | 9735-9911 | 10147-10194 | 10311-10469 | 10677-10790 | 10867-10955 | 11066-11224 | 11308-11410 | 11618-11737 | 11827-11877 | 11956-12138 | 12219-12455 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 1794 1814 NANot foundNot found
Segsegseg 21 32 NANot foundNot found
Segsegseg 1703 1715 NANot foundNot found
HMMPfamPF02364Glucan_synthase 1033 1788 3e-249IPR003440Glycosyl transferase, family 48
Gene Ontology
GO TermGO TypeDescription
GO:0000148 Cellular Component 1,3-beta-glucan synthase complex
GO:0003843 Molecular Function 1,3-beta-glucan synthase activity
GO:0006075 Biological Process 1,3-beta-glucan biosynthetic process
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q9SFU60.0CALS9_ARATH Callose synthase 9 OS=Arabidopsis thaliana GN=CALS9 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9XEG10.0Q9XEG1_GOSHI Putative callose synthase catalytic subunit OS=Gossypium hirsutum GN=CFL1 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT1G05570.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT1G06490.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT2G13680.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT2G31960.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT2G36850.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT3G07160.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT3G59100.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT4G03550.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT4G04970.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT5G13000.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT5G36870.1
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol001670
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol002814
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol003544
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol004161
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol005100
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol006691
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol007650
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol008141
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol014106
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol019328
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol020665
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol023771
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol032168
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol032652
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol034005
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol040999
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol041063
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol043468
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra001239
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra003364
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra005239
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra005620
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra005624
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra008864
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra015436
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra015504
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra023386
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra027328
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra029541
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra029628
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra032416
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra034218
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra037213
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra040364
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01000622001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01001361001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01005204001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01007560001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01020548001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01020854001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01025362001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01025370001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01025372001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01026489001
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs01t0533000-00
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs01t0533500-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs01t0754200-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs01t0754200-02
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs01t0754200-03
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs01t0754200-04
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs02t0247050-00
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs02t0832400-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs02t0832400-02
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs03t0119500-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs03t0119500-02
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs03t0128100-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs03t0128100-02
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs03t0128200-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs06t0112800-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs06t0112800-02
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs06t0182300-01
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0001s04930.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0001s04940.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0001s04970.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0001s23710.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0002s05970.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0003s21690.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0005s05970.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0005s22510.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0005s22510.2
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0011s05210.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0011s09740.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0013s13490.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0015s10080.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0015s10090.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb01g048630.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb01g049270.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb01g050470.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb01g050480.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb03g023490.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb03g023520.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb03g030800.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb03g034880.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb04g008830.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb04g038510.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb10g005550.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb10g030970.1
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_189.9
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_2050.3
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_25.167
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_3407.1
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_452.2
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_50.97
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_50.98
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_714.1
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_858.2
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_973.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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